View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15362_low_3 (Length: 415)

Name: NF15362_low_3
Description: NF15362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15362_low_3
NF15362_low_3
[»] chr6 (8 HSPs)
chr6 (3-405)||(6257637-6258042)
chr6 (157-280)||(6232659-6232782)
chr6 (118-211)||(6251567-6251657)
chr6 (116-205)||(6283562-6283651)
chr6 (101-211)||(6237220-6237334)
chr6 (312-406)||(25050979-25051074)
chr6 (127-211)||(6262443-6262525)
chr6 (25-69)||(10090925-10090969)
[»] chr4 (9 HSPs)
chr4 (311-406)||(8818642-8818738)
chr4 (312-406)||(18812560-18812655)
chr4 (213-280)||(25203238-25203305)
chr4 (330-391)||(25843551-25843612)
chr4 (312-406)||(10032577-10032672)
chr4 (23-89)||(2406233-2406299)
chr4 (367-405)||(8678700-8678738)
chr4 (47-87)||(36710871-36710911)
chr4 (37-81)||(45199341-45199385)
[»] scaffold0245 (2 HSPs)
scaffold0245 (312-406)||(11211-11306)
scaffold0245 (312-401)||(9589-9679)
[»] chr3 (9 HSPs)
chr3 (330-401)||(43652754-43652825)
chr3 (4-89)||(41907351-41907433)
chr3 (27-79)||(37430755-37430807)
chr3 (311-402)||(43819835-43819929)
chr3 (26-81)||(3369272-3369327)
chr3 (314-406)||(34143065-34143158)
chr3 (1-88)||(28421521-28421607)
chr3 (222-251)||(41874418-41874447)
chr3 (311-406)||(548207-548303)
[»] chr1 (7 HSPs)
chr1 (312-406)||(1284944-1285039)
chr1 (210-252)||(13045574-13045616)
chr1 (26-80)||(15309363-15309417)
chr1 (37-82)||(6570782-6570827)
chr1 (222-251)||(33773109-33773138)
chr1 (2-82)||(31481237-31481316)
chr1 (33-81)||(41708099-41708147)
[»] chr8 (4 HSPs)
chr8 (1-81)||(25140341-25140420)
chr8 (5-89)||(10658850-10658932)
chr8 (31-88)||(18003974-18004031)
chr8 (41-86)||(33525186-33525231)
[»] chr2 (3 HSPs)
chr2 (205-251)||(41602351-41602397)
chr2 (26-89)||(38002356-38002417)
chr2 (222-251)||(25306723-25306752)
[»] chr5 (2 HSPs)
chr5 (316-406)||(4897321-4897412)
chr5 (331-399)||(29094250-29094318)
[»] scaffold0229 (1 HSPs)
scaffold0229 (312-401)||(9917-10007)
[»] chr7 (1 HSPs)
chr7 (1-89)||(5907324-5907411)


Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 3 - 405
Target Start/End: Original strand, 6257637 - 6258042
Alignment:
Q  3 ccgtttgggttattcctagagttaggtctaatgttcccccagtctttgtatctatttctttttatttaatatcttttctactttgccnnnnnnngaa--- 99  Q
    |||||| |||||||||| |||||||||||||||| ||||||||||| |||||| ||||||||||| |||||||||||||||||||||        ||       
T  6257637 ccgtttaggttattcctggagttaggtctaatgtccccccagtcttcgtatctctttctttttatctaatatcttttctactttgccaaaaaaaaaaaaa 6257736  T
Q  100 ccccttcataactaatgctttgttttgttgtgtataggctggccagcaagcaaaggttaaagcatattgagctgctgatgtagagaataatgcaacatgg 199  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6257737 ccccttcataactaatgctttgttttgttgtgtataggctgggcagcaagcaaaggttaaagcatattgagccgctgatgtagagaataatgcaacatgg 6257836  T
Q  200 atgaactaattattacattatggttagttagagtgtttgagaagtttggttagaattatttactccaactaatctctatatgtatataggaagactcacc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6257837 atgaactaattattacattatggttagttagagtgtttgagaagtttggttagagttatttactccaactaatctctatatgtatataggaagactcacc 6257936  T
Q  300 atatcatttccattatctttttcaatctaatcaatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaatccatct 399  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6257937 atatcatttccattatctctttcaatctaatcaatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaattcatct 6258036  T
Q  400 tcatct 405  Q
    ||||||    
T  6258037 tcatct 6258042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 157 - 280
Target Start/End: Original strand, 6232659 - 6232782
Alignment:
Q  157 taaagcatattgagctgctgatgtagagaataatgcaacatggatgaactaattattacattatggttagttagagtgtttgagaagtttggttagaatt 256  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||  || |||||||||||||||| | ||||||||||||| ||    
T  6232659 taaagcacattgagctgctgatgtagagaagaatgcaacatggatgacctaattattgcaccatagttagttagagtgtttaaaaagtttggttagagtt 6232758  T
Q  257 atttactccaactaatctctatat 280  Q
    | ||||| |||||||||| |||||    
T  6232759 agttacttcaactaatctttatat 6232782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 6251567 - 6251657
Alignment:
Q  118 tttgttttgttgtgtataggctggccagcaagcaaaggttaaagcatattgagctgctgatgtagagaataatgcaacatggatgaactaatta 211  Q
    |||||||||||||   |||||| | ||||||||||||||||||||| | |||| |||||||| |||||| |||||| |||||||||||||||||    
T  6251567 tttgttttgttgt---taggcttggcagcaagcaaaggttaaagcacaatgagttgctgatgcagagaagaatgcaccatggatgaactaatta 6251657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 6283562 - 6283651
Alignment:
Q  116 gctttgttttgttgtgtataggctggccagcaagcaaaggttaaagcatattgagctgctgatgtagagaataatgcaacatggatgaac 205  Q
    ||||||||||||||| |||||||||| ||||||||| ||| ||||||| |  |||||| ||||| || ||| ||||||||| ||||||||    
T  6283562 gctttgttttgttgtttataggctggacagcaagcacaggctaaagcacaaggagctgttgatgcagtgaagaatgcaacagggatgaac 6283651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 6237220 - 6237334
Alignment:
Q  101 cccttcataactaatgctttgttttgt--tgtgta--taggctggccagcaagcaaaggttaaagcatattgagctgctgatgtagagaataatgcaaca 196  Q
    ||||| |||| ||||| ||||||||||  ||||||  |||||| | |||||||||||| |||||||| | |||| ||||| || ||| || ||| |||||    
T  6237220 ccctttataagtaatgttttgttttgtggtgtgtacgtaggcttggcagcaagcaaagattaaagcacaatgagttgctggtgcagataagaatccaaca 6237319  T
Q  197 tggatgaactaatta 211  Q
    || ||||||||||||    
T  6237320 tgaatgaactaatta 6237334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 406
Target Start/End: Original strand, 25050979 - 25051074
Alignment:
Q  312 ttatctttttcaatctaat-caatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaatccatcttcatctc 406  Q
    |||||||||||||| |||| |||||||||  | || || ||||||||||| || | || | | |||||||||||||||||| | ||||||||||||    
T  25050979 ttatctttttcaatttaattcaatatgaattacaaagattattcctttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 25051074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 6262443 - 6262525
Alignment:
Q  127 ttgtgtataggctggccagcaagcaaaggttaaagcatattgagctgctgatgtagagaataatgcaacatggatgaactaatta 211  Q
    ||||||||||||||||||||||| ||||| ||||||| |   ||||||  ||| || ||| ||||||| | ||||||||||||||    
T  6262443 ttgtgtataggctggccagcaagtaaaggctaaagcaca--aagctgccaatgcagtgaagaatgcaatagggatgaactaatta 6262525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 10090969 - 10090925
Alignment:
Q  25 taggtctaatgttcccccagtctttgtatctatttctttttattt 69  Q
    ||||||||||||||| ||| ||| ||||||| |||||||||||||    
T  10090969 taggtctaatgttccaccaatctatgtatctctttctttttattt 10090925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 406
Target Start/End: Complemental strand, 8818738 - 8818642
Alignment:
Q  311 attatctttttcaatctaat-caatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaatccatcttcatctc 406  Q
    |||||| ||||| ||||||| |||||| || |||||||| |||||||||||||||| || ||| ||||||||||||||| || | ||||||||||||    
T  8818738 attatccttttctatctaattcaatataaatcataaggattattcctttgtatcaatctctcatgcctacttctcctataaacttcatcttcatctc 8818642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 406
Target Start/End: Complemental strand, 18812655 - 18812560
Alignment:
Q  312 ttatctttttcaatctaat-caatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaatccatcttcatctc 406  Q
    ||||||||||||||||||| |||||||||  | ||||| ||||| ||||| || | || ||| |||||||||||||||||| | ||||||||||||    
T  18812655 ttatctttttcaatctaattcaatatgaattacaaggattattcttttgtttctacctctcatgcctacttctcctatgaacttcatcttcatctc 18812560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 25203305 - 25203238
Alignment:
Q  213 tacattatggttagttagagtgtttgagaagtttggttagaattatttactccaactaatctctatat 280  Q
    |||| ||| |||||||||| ||||||| |||||||||||||| || |||||| |||||||||||||||    
T  25203305 tacactatagttagttagaatgtttgaaaagtttggttagaaataattactctaactaatctctatat 25203238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 391
Target Start/End: Original strand, 25843551 - 25843612
Alignment:
Q  330 tcaatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaa 391  Q
    ||||||||||||||||||| ||||||||||| || | ||||||||| ||| |||||||||||    
T  25843551 tcaatatgaaacataaggattattcctttgtttctacctatcaagcttacctctcctatgaa 25843612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 406
Target Start/End: Complemental strand, 10032672 - 10032577
Alignment:
Q  312 ttatctttttcaatctaat-caatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaatccatcttcatctc 406  Q
    |||||||||||| |||||| |||||||||  | ||||| ||||||||||| || | || | | |||||||||||||||||| | ||||||||||||    
T  10032672 ttatctttttcattctaattcaatatgaattacaaggactattcctttgtttctacctctaatgcctacttctcctatgaacttcatcttcatctc 10032577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 2406299 - 2406233
Alignment:
Q  23 gttaggtctaatgttcccccagtctttgtatctatttctttttatttaatatcttttctactttgcc 89  Q
    |||||||||||| | |||| |||| ||||| || ||||||||||||||| || ||||||| ||||||    
T  2406299 gttaggtctaatttccccctagtcattgtacctttttctttttatttaacatattttctattttgcc 2406233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 405
Target Start/End: Original strand, 8678700 - 8678738
Alignment:
Q  367 ctatcaagcctacttctcctatgaaatccatcttcatct 405  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  8678700 ctatcaagcctacttctcctatgaatttcatcttcatct 8678738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 36710911 - 36710871
Alignment:
Q  47 tttgtatctatttctttttatttaatatcttttctactttg 87  Q
    ||||||||| |||||||||||||||||| ||||||| ||||    
T  36710911 tttgtatctctttctttttatttaatatattttctattttg 36710871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 45199385 - 45199341
Alignment:
Q  37 tcccccagtctttgtatctatttctttttatttaatatcttttct 81  Q
    ||||| ||||||||||||| |||||||||||||| ||| ||||||    
T  45199385 tcccctagtctttgtatctttttctttttatttattattttttct 45199341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 406
Target Start/End: Original strand, 11211 - 11306
Alignment:
Q  312 ttatctttttcaatctaat-caatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaatccatcttcatctc 406  Q
    ||||||||||||||||||| |||||||||  | ||||| ||||||||||| || | || | | |||||||||||||||||| | ||||||||||||    
T  11211 ttatctttttcaatctaattcaatatgaattacaaggattattcctttgtttctacctctaaggcctacttctcctatgaacttcatcttcatctc 11306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 9589 - 9679
Alignment:
Q  312 ttatctttttcaatctaat-caatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaatccatcttc 401  Q
    ||||||||||||||||||| |||||||||  | ||||| ||||||| ||| || | || | | |||||||||||||||||| | |||||||    
T  9589 ttatctttttcaatctaattcaatatgaattacaaggattattcctctgtttctacctctaaggcctacttctcctatgaacttcatcttc 9679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 43652754 - 43652825
Alignment:
Q  330 tcaatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaatccatcttc 401  Q
    |||||||||||||| |||||| |||||||||||||| ||||||| ||||| | ||||||||| | |||||||    
T  43652754 tcaatatgaaacattaggagttttcctttgtatcaacctatcaaacctacctttcctatgaagttcatcttc 43652825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 41907351 - 41907433
Alignment:
Q  4 cgtttgggttattcctagagttaggtctaatgttcccccagtctttgtatctatttctttttatttaatatcttttctactttgcc 89  Q
    |||||||||||||||| | || |||||| |||| |||||| ||||||||||| |||||||||||||||||| ||||||| ||||||    
T  41907351 cgtttgggttattcctgg-gtcaggtctgatgt-cccccaatctttgtatct-tttctttttatttaatatattttctattttgcc 41907433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 37430755 - 37430807
Alignment:
Q  27 ggtctaatgttcccccagtctttgtatctatttctttttatttaatatctttt 79  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||| ||||    
T  37430755 ggtctaatgtcccctcagtctttgtatctatttctttttattttatatatttt 37430807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 402
Target Start/End: Complemental strand, 43819929 - 43819835
Alignment:
Q  311 attatctttttcaatctaa---tcaatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaatccatcttca 402  Q
    ||||||||||||| |||||   ||||||||||  ||||||| ||||| ||||||||||  |||||| | |||||||| |||||||| ||||||||    
T  43819929 attatctttttcattctaattttcaatatgaattataaggattattcttttgtatcaacttatcaatcatacttctcttatgaaattcatcttca 43819835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 3369327 - 3369272
Alignment:
Q  26 aggtctaatgttcccccagtctttgtatctatttctttttatttaatatcttttct 81  Q
    |||||| |||| |||||| ||||||||||| |||||||||||||||||| ||||||    
T  3369327 aggtcttatgtccccccaatctttgtatctttttctttttatttaatatattttct 3369272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 406
Target Start/End: Original strand, 34143065 - 34143158
Alignment:
Q  314 atctttttcaatctaat-caatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaatccatcttcatctc 406  Q
    ||||||||||||||||| |||||||||  | ||||| ||||||||||| || | || | | |||||||||||||||||| | || |||||||||    
T  34143065 atctttttcaatctaattcaatatgaattacaaggattattcctttgtttctacctctaatgcctacttctcctatgaacttcaccttcatctc 34143158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 28421521 - 28421607
Alignment:
Q  1 ttccgtttgggttattcctagagttaggtctaatgttcccccagtctttgtatctatttctttttatttaatatcttttctactttgc 88  Q
    ||||| ||| ||||||||||| || |||||||||||| | | ||||||| ||| | ||| |||||||||||||| |||||| ||||||    
T  28421521 ttccgcttgagttattcctag-gtcaggtctaatgtttctctagtctttatatatctttgtttttatttaatatattttctcctttgc 28421607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 41874418 - 41874447
Alignment:
Q  222 gttagttagagtgtttgagaagtttggtta 251  Q
    ||||||||||||||||||||||||||||||    
T  41874418 gttagttagagtgtttgagaagtttggtta 41874447  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 406
Target Start/End: Original strand, 548207 - 548303
Alignment:
Q  311 attatctttttcaatctaat-caatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaatccatcttcatctc 406  Q
    ||||||||||||| |||||| |||||||||  | ||||| ||||||||||| || | || | | | | |||||||||||||| | ||||||||||||    
T  548207 attatctttttcattctaattcaatatgaattacaaggattattcctttgtttctatctctaatgtccacttctcctatgaagttcatcttcatctc 548303  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 406
Target Start/End: Original strand, 1284944 - 1285039
Alignment:
Q  312 ttatctttttcaatctaat-caatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaatccatcttcatctc 406  Q
    ||||||||||||||||||| |||||||||  | ||||| ||||||||||| || | || | | |||||||||||||||||| | ||||||||||||    
T  1284944 ttatctttttcaatctaattcaatatgaattacaaggattattcctttgtttctacctctaaggcctacttctcctatgaacttcatcttcatctc 1285039  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 13045574 - 13045616
Alignment:
Q  210 tattacattatggttagttagagtgtttgagaagtttggttag 252  Q
    ||||||| ||| |||||| ||||||||||||||||||||||||    
T  13045574 tattacactatagttagtaagagtgtttgagaagtttggttag 13045616  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 15309363 - 15309417
Alignment:
Q  26 aggtctaatgttcccccagtctttgtatctatttctttttatttaatatcttttc 80  Q
    ||||||||| |||||||||||| ||||||| | | |||||||||||||| |||||    
T  15309363 aggtctaatattcccccagtctctgtatctctctatttttatttaatatattttc 15309417  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 6570827 - 6570782
Alignment:
Q  37 tcccccagtctttgtatctatttctttttatttaatatcttttcta 82  Q
    ||||||||||||||||||| ||| |||||||||| ||| |||||||    
T  6570827 tcccccagtctttgtatctgtttgtttttatttattatattttcta 6570782  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 33773109 - 33773138
Alignment:
Q  222 gttagttagagtgtttgagaagtttggtta 251  Q
    ||||||||||||||||||||||||||||||    
T  33773109 gttagttagagtgtttgagaagtttggtta 33773138  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 31481316 - 31481237
Alignment:
Q  2 tccgtttgggttattcctagagttaggtctaatgttcccccagtctttgtatctatttctttttatttaatatcttttcta 82  Q
    ||||| |||||||||||| | || ||||||||||| ||||| ||||||||| |  || |||||||||| |||| |||||||    
T  31481316 tccgtctgggttattcctgg-gtcaggtctaatgtccccccggtctttgtaacacttcctttttattttatatattttcta 31481237  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 41708147 - 41708099
Alignment:
Q  33 atgttcccccagtctttgtatctatttctttttatttaatatcttttct 81  Q
    |||| |||||| ||||||| ||| |||||||||||||||||| ||||||    
T  41708147 atgtccccccaatctttgtgtctttttctttttatttaatatattttct 41708099  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 25140420 - 25140341
Alignment:
Q  1 ttccgtttgggttattcctagagttaggtctaatgttcccccagtctttgtatctatttctttttatttaatatcttttct 81  Q
    ||||||||| ||||||||| |||| |||||| ||||||||||||||| |||| || |||| ||||||||| ||| ||||||    
T  25140420 ttccgtttgagttattcct-gagtcaggtctcatgttcccccagtctatgtacctctttcattttatttattatattttct 25140341  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 10658932 - 10658850
Alignment:
Q  5 gtttgggttattcctagagttaggtctaatgttcccccagtctttgtatctatttctttttatttaatatcttttctactttgcc 89  Q
    |||||||||||||||| ||| ||||||||| | |||  ||||||||||||| || ||||||||||| ||| ||||||| ||||||    
T  10658932 gtttgggttattccta-agtcaggtctaatttccccatagtctttgtatctctt-ctttttatttattatattttctattttgcc 10658850  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 18003974 - 18004031
Alignment:
Q  31 taatgttcccccagtctttgtatctatttctttttatttaatatcttttctactttgc 88  Q
    |||||| |||| ||||||||||||| ||| |||||||||||| | ||||||| |||||    
T  18003974 taatgtccccctagtctttgtatctttttatttttatttaatgtattttctattttgc 18004031  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 33525231 - 33525186
Alignment:
Q  41 ccagtctttgtatctatttctttttatttaatatcttttctacttt 86  Q
    |||| |||||||| ||||||||||||||| |||| |||||||||||    
T  33525231 ccagactttgtatatatttctttttattttatatattttctacttt 33525186  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 41602351 - 41602397
Alignment:
Q  205 ctaattattacattatggttagttagagtgtttgagaagtttggtta 251  Q
    |||||||||| | ||| ||||||||||||||||||||||||||||||    
T  41602351 ctaattattagaatatagttagttagagtgtttgagaagtttggtta 41602397  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 38002356 - 38002417
Alignment:
Q  26 aggtctaatgttcccccagtctttgtatctatttctttttatttaatatcttttctactttgcc 89  Q
    ||||||||||  |||||||||||||||||| |||| |||||||| |||| ||||||| ||||||    
T  38002356 aggtctaatg--cccccagtctttgtatctctttccttttattttatatattttctattttgcc 38002417  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 25306723 - 25306752
Alignment:
Q  222 gttagttagagtgtttgagaagtttggtta 251  Q
    ||||||||||||||||||||||||||||||    
T  25306723 gttagttagagtgtttgagaagtttggtta 25306752  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 406
Target Start/End: Complemental strand, 4897412 - 4897321
Alignment:
Q  316 ctttttcaatctaat-caatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaatccatcttcatctc 406  Q
    |||||||| |||||| |||||||||  | ||||| ||||||||||| || | || | | |||||||||||||||||| | ||||||||||||    
T  4897412 ctttttcattctaattcaatatgaattacaaggattattcctttgtttctacctctaatgcctacttctcctatgaagttcatcttcatctc 4897321  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 399
Target Start/End: Original strand, 29094250 - 29094318
Alignment:
Q  331 caatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaatccatct 399  Q
    |||||||||||| ||  | ||||||||||||||||  |||||| |||| ||||||||| |||| |||||    
T  29094250 caatatgaaacacaataattattcctttgtatcaacttatcaaacctatttctcctataaaattcatct 29094318  T

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Target: scaffold0229 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 9917 - 10007
Alignment:
Q  312 ttatctttttcaatctaat-caatatgaaacataaggagtattcctttgtatcaagctatcaagcctacttctcctatgaaatccatcttc 401  Q
    ||||||||||||||||||| |||||||||  | ||||| ||||||| ||| || | || | | |||||||||||||||||| | |||||||    
T  9917 ttatctttttcaatctaattcaatatgaattacaaggattattcctctgtttctacctctaaggcctacttctcctatgaacttcatcttc 10007  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 5907324 - 5907411
Alignment:
Q  1 ttccgtttgggttattcctagagttaggtctaatgttcccccagtctttgtatctatttctttttatttaatatcttttctactttgcc 89  Q
    |||| ||||| |||||||||| || |||| || |||  || |||||||||||||| ||||||||||||| | || ||||||| ||||||    
T  5907324 ttccttttggattattcctag-gtcaggtttactgtctcctcagtctttgtatctctttctttttattttaaatattttctattttgcc 5907411  T

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