View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15362_low_4 (Length: 400)

Name: NF15362_low_4
Description: NF15362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15362_low_4
NF15362_low_4
[»] chr6 (5 HSPs)
chr6 (1-384)||(302071-302455)
chr6 (327-384)||(12028463-12028520)
chr6 (327-384)||(12035383-12035440)
chr6 (340-384)||(12035499-12035543)
chr6 (344-384)||(20657505-20657545)
[»] chr3 (5 HSPs)
chr3 (148-292)||(38250246-38250393)
chr3 (222-331)||(38255265-38255385)
chr3 (17-66)||(37458937-37458986)
chr3 (22-66)||(38250639-38250683)
chr3 (336-373)||(38254988-38255025)
[»] chr2 (3 HSPs)
chr2 (74-218)||(22178249-22178402)
chr2 (326-384)||(22177924-22177982)
chr2 (17-66)||(22178507-22178556)


Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 302071 - 302455
Alignment:
Q  1 tgaaaggaaaggagtcaaggacacaagatttatcgaggttcggatcaatttctcctacgtcctcacgtcctatttgatcttgaaatcacttactaccaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  302071 tgaaaggaaaggagtcaaggacacaagatttatcgaggttcggatcaatttctcctacgtcctcacgtcctatttgatcttgaaatcacttactaccaat 302170  T
Q  101 agcacgctttctacaagcaacaaactacaatacatatagctattgctaacagaaaa-aagaggtaaaggctagccatcacaatagctttataaagttgtt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  302171 agcacgctttctacaagcaacaaactacaatacatatagctattgctaacagaaaaaaagaggtaaaggctagccatcacaatagctttataaagttgtt 302270  T
Q  200 aaacatttactaactaatttccatttgagatccaccagaattacaaaatttcaatcttgagttcttactctgaattgcaggaaaaagttttttgttttgt 299  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  302271 aaacatttactaactaattaccatttgagatccaccagaattacaaaatttcaatcttgagttcttactctcaattgcaggaaaaagttttttgttttgt 302370  T
Q  300 ttatggtatgatgtagcgattcatgaaaattgaaacagtaatggtttggactccatccaatttcgcagcaacatcacttcctaac 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  302371 ttatggtatgatgtagcgattcatgaaaattgaaacagtaatggtttggactccatccaatttcgcagcaacatcacttcctaac 302455  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 12028463 - 12028520
Alignment:
Q  327 aattgaaacagtaatggtttggactccatccaatttcgcagcaacatcacttcctaac 384  Q
    ||||| ||| || ||||||||||||||||||||||| |||||||||||| ||||||||    
T  12028463 aattgcaacggttatggtttggactccatccaattttgcagcaacatcaattcctaac 12028520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 12035383 - 12035440
Alignment:
Q  327 aattgaaacagtaatggtttggactccatccaatttcgcagcaacatcacttcctaac 384  Q
    ||||| ||| || ||||||||||||||||||||||| |||||||||||| ||||||||    
T  12035383 aattgcaacggttatggtttggactccatccaattttgcagcaacatcaattcctaac 12035440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 12035499 - 12035543
Alignment:
Q  340 atggtttggactccatccaatttcgcagcaacatcacttcctaac 384  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||    
T  12035499 atggtttggactccatccaattttgcagcaacatcaattcctaac 12035543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 384
Target Start/End: Complemental strand, 20657545 - 20657505
Alignment:
Q  344 tttggactccatccaatttcgcagcaacatcacttcctaac 384  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  20657545 tttggactccatccaattttgcagcaacatcaattcctaac 20657505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 148 - 292
Target Start/End: Complemental strand, 38250393 - 38250246
Alignment:
Q  148 aacagaaaaaa-gaggtaaaggctagccatcacaatagctttataaagttgttaaacatttactaactaatttccatttgagatccaccagaat--taca 244  Q
    ||||||||||| |||| |||||||||| ||| ||||||||||||||||||||||  |||||||| ||||||| |||||||||||||||||||||   | |    
T  38250393 aacagaaaaaacgaggcaaaggctagctatcgcaatagctttataaagttgttaggcatttacttactaattaccatttgagatccaccagaataaaaaa 38250294  T
Q  245 aaatttcaatcttgagttcttactctgaattgcaggaaaaagtttttt 292  Q
    ||| ||||||||||| |||||||  ||||||||||||||| |||||||    
T  38250293 aaaattcaatcttgaattcttacaatgaattgcaggaaaatgtttttt 38250246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 38255385 - 38255265
Alignment:
Q  222 atttgagatccaccagaattacaaaatttcaatcttgagttcttact-------ctgaattgcaggaaaaagttttttgttttgtttatggtatg----a 310  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| |       ||||||||| |||||| |||||||||| |||||||||||||    |    
T  38255385 atttgagatccactagaattacaaaatttcaatcttgaattcttatttcttaaactgaattgctggaaaatgttttttgttatgtttatggtatgatata 38255286  T
Q  311 tgtagcgattcatgaaaattg 331  Q
    |||||| ||||||||||||||    
T  38255285 tgtagcaattcatgaaaattg 38255265  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 37458937 - 37458986
Alignment:
Q  17 aaggacacaagatttatcgaggttcggatcaatttctcctacgtcctcac 66  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  37458937 aaggacacaagatttatcaaggttcgggtcaatttctcctacgtcctcac 37458986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 38250683 - 38250639
Alignment:
Q  22 cacaagatttatcgaggttcggatcaatttctcctacgtcctcac 66  Q
    |||||||||||| |||||||||||||||||||||||| |||||||    
T  38250683 cacaagatttattgaggttcggatcaatttctcctacatcctcac 38250639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 38255025 - 38254988
Alignment:
Q  336 agtaatggtttggactccatccaatttcgcagcaacat 373  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  38255025 agtaatggtttggactccatccaattttgcagcaacat 38254988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 22178402 - 22178249
Alignment:
Q  74 ttgatcttgaaatcacttactaccaatagcacgctttctacaagcaacaaactacaatacatatagctattgct---------aacagaaaaaagaggta 164  Q
    |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||  ||  || |||||| ||||         | ||||||||||||| |    
T  22178402 ttgatcttgaaatcacttaccaccaataccatgctttatacaagcaacaaactaagatttatgtagctactgcttctctctaaagcagaaaaaagaggca 22178303  T
Q  165 aaggctagccatcacaatagctttataaagttgttaaacatttactaactaatt 218  Q
    ||||||||| |||||| |||||||| ||||||||||   |||||||||||||||    
T  22178302 aaggctagctatcacagtagctttacaaagttgttaggtatttactaactaatt 22178249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 22177982 - 22177924
Alignment:
Q  326 aaattgaaacagtaatggtttggactccatccaatttcgcagcaacatcacttcctaac 384  Q
    |||||| || |||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  22177982 aaattgcaaaagtaatggtttggactccatccaatttcccagaaacatcactttctaac 22177924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 22178556 - 22178507
Alignment:
Q  17 aaggacacaagatttatcgaggttcggatcaatttctcctacgtcctcac 66  Q
    ||||||||||||||||||||||||| ||||||||||| || |||||||||    
T  22178556 aaggacacaagatttatcgaggttcagatcaatttcttcttcgtcctcac 22178507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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