View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15362_low_5 (Length: 369)

Name: NF15362_low_5
Description: NF15362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15362_low_5
NF15362_low_5
[»] chr8 (1 HSPs)
chr8 (75-349)||(43393183-43393456)
[»] chr7 (2 HSPs)
chr7 (236-309)||(48025415-48025488)
chr7 (236-309)||(18699956-18700029)
[»] chr3 (2 HSPs)
chr3 (236-312)||(50129058-50129134)
chr3 (239-309)||(26042273-26042343)
[»] chr4 (3 HSPs)
chr4 (236-311)||(27382041-27382116)
chr4 (249-312)||(30617630-30617693)
chr4 (236-312)||(54877349-54877424)
[»] chr1 (2 HSPs)
chr1 (236-312)||(38081642-38081718)
chr1 (236-294)||(37209838-37209896)
[»] chr2 (1 HSPs)
chr2 (239-313)||(37980334-37980408)
[»] chr5 (1 HSPs)
chr5 (236-312)||(19521435-19521510)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 75 - 349
Target Start/End: Original strand, 43393183 - 43393456
Alignment:
Q  75 caaaggaatcaagctaaaacagatttatatcatcatgcgttggtgaaaatcaatgaatacagaagctgagtaaaaacctttcagcatcagaagacatgga 174  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  43393183 caaaggaatcaagctaaaacagatttatatcatcatgtgttggtgaaaatcaatgaatacagaagctgagtaaaaacctttcagcatcagaagacatg-a 43393281  T
Q  175 aaaggctaactggacaaaatcaaatcccagggcatacataagggcacaagaaaaaacttttaagataaaatttaaaacttttaagatattgaatgcaaca 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43393282 aaaggctaactggacaaaatcaaatcccagggcatacataagggcacaagaaaaaacttttaagataaaattttaaacttttaagatattgaatgcaaca 43393381  T
Q  275 tttccaagaataaacttctatgtttagtttctaaacttgaagttagcatttcccataaataaatcacacacaatc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43393382 tttccaagaataaacttctatgtttagtttctaaacttgaagttagcatttcccataaataaatcacacacaatc 43393456  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 48025488 - 48025415
Alignment:
Q  236 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaa 309  Q
    ||||| |||||| ||| |||||||||| | |||||| |||||||||||| || |||||||||||||||||||||    
T  48025488 aagattaaattttaaatttttaagatagtaaatgcatcatttccaagaaaaagcttctatgtttagtttctaaa 48025415  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 18700029 - 18699956
Alignment:
Q  236 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaa 309  Q
    |||| ||||||| |||||||||| |||||||||| |  ||||||||||| ||  ||||| ||||||||||||||    
T  18700029 aagacaaaatttcaaacttttaatatattgaatgtacaatttccaagaaaaagtttctaggtttagtttctaaa 18699956  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 50129134 - 50129058
Alignment:
Q  236 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaactt 312  Q
    |||||||||||| |||||||||| ||||||||||||  |||| ||| || |   |||||||||||||||||||||||    
T  50129134 aagataaaatttcaaacttttaatatattgaatgcacaattttcaaaaaaaggtttctatgtttagtttctaaactt 50129058  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 26042273 - 26042343
Alignment:
Q  239 ataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaa 309  Q
    ||||||||| | |||||||||||||||||||||  |||| |||||| ||||||  |||||| |||||||||    
T  26042273 ataaaattttatacttttaagatattgaatgcattattttcaagaaaaaactttcatgttttgtttctaaa 26042343  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 311
Target Start/End: Original strand, 27382041 - 27382116
Alignment:
Q  236 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaact 311  Q
    |||| ||||||| |||||||||| |||||||||  |  ||||||||||| ||  ||||||||||||||||||||||    
T  27382041 aagacaaaatttcaaacttttaatatattgaatatacaatttccaagaaaaagtttctatgtttagtttctaaact 27382116  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 30617630 - 30617693
Alignment:
Q  249 aaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaactt 312  Q
    |||||||||||| ||||||||||  ||||||||||| |||||||||| ||| |||||| |||||    
T  30617630 aaacttttaagagattgaatgcacaatttccaagaaaaaacttctatatttggtttcttaactt 30617693  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 54877349 - 54877424
Alignment:
Q  236 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaactt 312  Q
    |||||||||||||| | |||||  | ||||||||||  |||| |||||| | | |||||||||||||||||||||||    
T  54877349 aagataaaatttaagatttttat-acattgaatgcacaattttcaagaaaatatttctatgtttagtttctaaactt 54877424  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 38081642 - 38081718
Alignment:
Q  236 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaactt 312  Q
    |||||||  ||| |||||||||||| ||||||||||  ||||||||||| ||||||| |  |||||||||| |||||    
T  38081642 aagataacttttgaaacttttaagacattgaatgcacaatttccaagaaaaaacttcaacatttagtttcttaactt 38081718  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 37209896 - 37209838
Alignment:
Q  236 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttcta 294  Q
    |||||||  ||| |||||||||||||||| ||||||  ||||||||||| |||||||||    
T  37209896 aagataacttttgaaacttttaagatattaaatgcacaatttccaagaaaaaacttcta 37209838  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 37980408 - 37980334
Alignment:
Q  239 ataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaacttg 313  Q
    ||||||||| |||||||||| ||||||||||||  ||||| ||||| |   || ||||||||| |||||||||||    
T  37980408 ataaaatttcaaacttttaatatattgaatgcacaatttctaagaaaaggtttatatgtttagcttctaaacttg 37980334  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 19521510 - 19521435
Alignment:
Q  236 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaactt 312  Q
    |||| ||||||| |||||||||| | ||||||||||  |||| ||| || || ||| ||||||||||||||||||||    
T  19521510 aagacaaaattttaaacttttaatacattgaatgcacaattttcaaaaagaa-cttatatgtttagtttctaaactt 19521435  T

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