View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15362_low_6 (Length: 319)
Name: NF15362_low_6
Description: NF15362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15362_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 40473853 - 40473990
Alignment:
| Q |
8 |
agattatactgaaattacctcagccatttgaaagtgttgagaaatcaggatgacacagttcaagttttgtgtagtagttctgtcagaataagttacgcgt |
107 |
Q |
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| T |
40473853 |
agattatattgaaattacctcagccatttgtaagtgttgataaatcaggatgacacagttcaagttttgtgtagtagttttgtcagaataagttacgcgt |
40473952 |
T |
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| Q |
108 |
actgcttcttttgtgacat---cgcatcgtccataaga |
142 |
Q |
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| T |
40473953 |
acttgttcttttgtggcatcgccgcatcgtccataaga |
40473990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 40473994 - 40474040
Alignment:
| Q |
176 |
aagacatgagtacatgacaatgctgtaccgcgttttgattgtaaaaa |
222 |
Q |
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| T |
40473994 |
aagacatgagtacatgacaatgctgtaccgcgttttgattgtaaaaa |
40474040 |
T |
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