View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15362_low_7 (Length: 254)

Name: NF15362_low_7
Description: NF15362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15362_low_7
NF15362_low_7
[»] chr3 (16 HSPs)
chr3 (56-240)||(37929501-37929685)
chr3 (56-141)||(22441589-22441674)
chr3 (56-141)||(22366768-22366853)
chr3 (56-141)||(22629287-22629372)
chr3 (152-212)||(22442332-22442392)
chr3 (58-141)||(22352654-22352737)
chr3 (79-141)||(22430057-22430119)
chr3 (56-141)||(22466792-22466877)
chr3 (56-141)||(22634302-22634387)
chr3 (153-203)||(37930451-37930501)
chr3 (56-141)||(22435475-22435560)
chr3 (152-212)||(22353402-22353462)
chr3 (69-132)||(22457363-22457426)
chr3 (69-132)||(22480344-22480407)
chr3 (56-141)||(22356834-22356919)
chr3 (152-212)||(22367514-22367574)
[»] chr1 (1 HSPs)
chr1 (183-211)||(34990046-34990074)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 56 - 240
Target Start/End: Complemental strand, 37929685 - 37929501
Alignment:
Q  56 aatagagttgtagagctaatccaagagctaggaaagctaaaacagctaagagaattgggcttggccggtgttaggagtaaatatattatttcaggttgca 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37929685 aatagagttgtagagctaatccaagagctaggaaagctaaaacagctaagggaattgggcttggccggtgttaggagtaaatatattatttcaggctgca 37929586  T
Q  156 accttttccaatgtccttttcccgtattctttcacaaacccttcagctatccattgatttgtcagtttgaagaaaatcttccaat 240  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37929585 accttttccaatgtcctttccccgtattctttcacaaacccttcagctatccattgatttgtcagtttgaagaaaatcttccaat 37929501  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 22441674 - 22441589
Alignment:
Q  56 aatagagttgtagagctaatccaagagctaggaaagctaaaacagctaagagaattgggcttggccggtgttaggagtaaatatat 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||    
T  22441674 aatagagttgtagagctaatccaagagctaggaaagctaaaacagctaaggaaattgggcttgaccggtgttaggagtaaatatat 22441589  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 22366853 - 22366768
Alignment:
Q  56 aatagagttgtagagctaatccaagagctaggaaagctaaaacagctaagagaattgggcttggccggtgttaggagtaaatatat 141  Q
    |||||||| |||||||||||  ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  22366853 aatagagtcgtagagctaattgaagagctaggaaaactaaagcagctaagggaattgggcttggccggtgttaggagtaaatatat 22366768  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 22629372 - 22629287
Alignment:
Q  56 aatagagttgtagagctaatccaagagctaggaaagctaaaacagctaagagaattgggcttggccggtgttaggagtaaatatat 141  Q
    |||||||| |||||||||||| |||| |||||||||||||| |||||||| ||||||| ||||  |||||||||||||||||||||    
T  22629372 aatagagtggtagagctaatcgaagatctaggaaagctaaatcagctaagggaattggtcttgctcggtgttaggagtaaatatat 22629287  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 22442332 - 22442392
Alignment:
Q  152 tgcaaccttttccaatgtccttttcccgtattctttcacaaacccttcagctatccattga 212  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  22442332 tgcaaccttttccaatgtcctttccccatattctttcacaaacccttcagctatccattga 22442392  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 22352737 - 22352654
Alignment:
Q  58 tagagttgtagagctaatccaagagctaggaaagctaaaacagctaagagaattgggcttggccggtgttaggagtaaatatat 141  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||| || |||| ||||  |||||||||||||||||||||    
T  22352737 tagagttgtagagctaattgaagagctaggaaagctaaatcagctaagggagttggtcttgtacggtgttaggagtaaatatat 22352654  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 22430119 - 22430057
Alignment:
Q  79 agagctaggaaagctaaaacagctaagagaattgggcttggccggtgttaggagtaaatatat 141  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||    
T  22430119 agagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatat 22430057  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 22466877 - 22466792
Alignment:
Q  56 aatagagttgtagagctaatccaagagctaggaaagctaaaacagctaagagaattgggcttggccggtgttaggagtaaatatat 141  Q
    |||||||| ||||||||||| ||||||||||||||||||||  || ||||| ||||| |||||   ||||||||||||||||||||    
T  22466877 aatagagtagtagagctaattcaagagctaggaaagctaaataagataagaaaattgagcttgataggtgttaggagtaaatatat 22466792  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 22634387 - 22634302
Alignment:
Q  56 aatagagttgtagagctaatccaagagctaggaaagctaaaacagctaagagaattgggcttggccggtgttaggagtaaatatat 141  Q
    |||||||| |||||| ||||  ||||||||||||||||||| ||||| || |||||  |||||| |||||||||||||||||||||    
T  22634387 aatagagtggtagagttaatagaagagctaggaaagctaaagcagcttagggaattaagcttggtcggtgttaggagtaaatatat 22634302  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 37930451 - 37930501
Alignment:
Q  153 gcaaccttttccaatgtccttttcccgtattctttcacaaacccttcagct 203  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  37930451 gcaaccttttccaatgtcctttcctcgtattctttcacaaacccttcagct 37930501  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 22435560 - 22435475
Alignment:
Q  56 aatagagttgtagagctaatccaagagctaggaaagctaaaacagctaagagaattgggcttggccggtgttaggagtaaatatat 141  Q
    ||||| || ||||||||||||  ||||||||||||||||| |||||| || |||||||||||||  | ||||||  ||||||||||    
T  22435560 aatagggtagtagagctaatcatagagctaggaaagctaacacagcttagggaattgggcttggttgttgttagtggtaaatatat 22435475  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 22353402 - 22353462
Alignment:
Q  152 tgcaaccttttccaatgtccttttcccgtattctttcacaaacccttcagctatccattga 212  Q
    |||||||| ||||| |||||||  ||||||||||||||||||||| ||||| |||||||||    
T  22353402 tgcaacctcttccattgtccttcccccgtattctttcacaaacccctcagcaatccattga 22353462  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 22457426 - 22457363
Alignment:
Q  69 agctaatccaagagctaggaaagctaaaacagctaagagaattgggcttggccggtgttaggag 132  Q
    |||||||||||||||||||||| ||||| || ||||| ||||||| ||||  ||||||||||||    
T  22457426 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggag 22457363  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 22480407 - 22480344
Alignment:
Q  69 agctaatccaagagctaggaaagctaaaacagctaagagaattgggcttggccggtgttaggag 132  Q
    |||||||||||||||||||||| ||||| || ||||| ||||||| ||||  ||||||||||||    
T  22480407 agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggag 22480344  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 22356919 - 22356834
Alignment:
Q  56 aatagagttgtagagctaatccaagagctaggaaagctaaaacagctaagagaattgggcttggccggtgttaggagtaaatatat 141  Q
    ||||||||||||||| ||||  ||||||| ||||| ||||| ||||| || |||||| |||||  |||| ||| ||||||||||||    
T  22356919 aatagagttgtagagttaatagaagagctgggaaaactaaagcagcttagggaattgagcttgagcggtcttaagagtaaatatat 22356834  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 22367514 - 22367574
Alignment:
Q  152 tgcaaccttttccaatgtccttttcccgtattctttcacaaacccttcagctatccattga 212  Q
    |||||||| |||||||||| ||  ||  | ||||||||||||||||||||| |||||||||    
T  22367514 tgcaacctcttccaatgtcattcccctttcttctttcacaaacccttcagcaatccattga 22367574  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 34990074 - 34990046
Alignment:
Q  183 tctttcacaaacccttcagctatccattg 211  Q
    |||||||||||||||||||||||||||||    
T  34990074 tctttcacaaacccttcagctatccattg 34990046  T

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