View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15363_high_12 (Length: 337)

Name: NF15363_high_12
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15363_high_12
NF15363_high_12
[»] chr3 (7 HSPs)
chr3 (19-205)||(54707822-54708008)
chr3 (215-279)||(54706884-54706948)
chr3 (56-109)||(54678025-54678078)
chr3 (110-167)||(34950433-34950490)
chr3 (107-171)||(23771553-23771617)
chr3 (106-167)||(50106711-50106772)
chr3 (211-243)||(44321595-44321627)
[»] chr4 (6 HSPs)
chr4 (107-168)||(28494641-28494702)
chr4 (107-168)||(20393923-20393984)
chr4 (107-171)||(45631421-45631485)
chr4 (117-176)||(24355828-24355887)
chr4 (117-176)||(34650878-34650937)
chr4 (107-168)||(27598264-27598325)
[»] chr6 (2 HSPs)
chr6 (109-168)||(31708565-31708624)
chr6 (109-168)||(2242372-2242431)
[»] chr8 (3 HSPs)
chr8 (109-168)||(5493786-5493845)
chr8 (125-167)||(25173422-25173464)
chr8 (106-170)||(36649232-36649296)
[»] chr5 (3 HSPs)
chr5 (107-170)||(7548236-7548299)
chr5 (107-168)||(14316287-14316348)
chr5 (124-169)||(34850598-34850643)
[»] chr7 (3 HSPs)
chr7 (106-193)||(36016416-36016504)
chr7 (126-174)||(44248574-44248622)
chr7 (207-243)||(45431848-45431884)
[»] chr2 (1 HSPs)
chr2 (110-197)||(32550539-32550627)
[»] chr1 (2 HSPs)
chr1 (110-198)||(30197243-30197331)
chr1 (110-167)||(22564934-22564991)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 54708008 - 54707822
Alignment:
Q  19 actcctcttttgtgaaaggtgtcgtgagcatctgattatccttcagagacatcttacggcgcacaacatcaataaccgatgtgaagttacttttaataag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54708008 actcctcttttgtgaaaggtgtcgtgagcatctgattatccttcagagacatcttacggcgcacaacatcaataaccgatgtgaagttacttttaataag 54707909  T
Q  119 ttgattgcataagttccaatgtaatgttactatatttgcttctttaaccaatgtcttggggcacccgttaacattacccttttgtta 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||    
T  54707908 ttgattgcataagttccaatgtaatgttactatatttgcttctttaaccaatatctcgggacacccgttaacattacccttttgtta 54707822  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 54706948 - 54706884
Alignment:
Q  215 aaatgcaaatggagcaaagatggactcgttaaaatgacactcaataatttctttatgaacccttt 279  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  54706948 aaatgcaaatggagtaaagatagactcgttaaaatgacactcaataatttgtttatgaacccttt 54706884  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 54678078 - 54678025
Alignment:
Q  56 atccttcagagacatcttacggcgcacaacatcaataaccgatgtgaagttact 109  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||    
T  54678078 atccttcggagacatcttacggcgcacaacatcaataactgatgcgaagttact 54678025  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 34950433 - 34950490
Alignment:
Q  110 tttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaacc 167  Q
    |||||| |||||| |||| ||||| |||||| ||||||||||||||||||| ||||||    
T  34950433 tttaatgagttgactgcacaagtttcaatgtgatgttactatatttgcttccttaacc 34950490  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 23771553 - 23771617
Alignment:
Q  107 acttttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaaccaatg 171  Q
    ||||||||| |||||| |||| ||| | |||||| || |||||||||||||| ||||||||||||    
T  23771553 acttttaatgagttgactgcagaagcttcaatgtgatattactatatttgctactttaaccaatg 23771617  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 50106772 - 50106711
Alignment:
Q  106 tacttttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaacc 167  Q
    |||||||||| |||||| |||| |||||||||||| || || |||||||| ||| |||||||    
T  50106772 tacttttaatgagttgactgcacaagttccaatgtgatatttctatatttacttatttaacc 50106711  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 44321595 - 44321627
Alignment:
Q  211 gagcaaatgcaaatggagcaaagatggactcgt 243  Q
    ||||||| |||||||||||||||||||||||||    
T  44321595 gagcaaaagcaaatggagcaaagatggactcgt 44321627  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 28494702 - 28494641
Alignment:
Q  107 acttttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaacca 168  Q
    ||||||||| ||||||||||| ||||||||| || ||||||||||||||||||| |||||||    
T  28494702 acttttaatgagttgattgcacaagttccaacgtgatgttactatatttgcttccttaacca 28494641  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 20393984 - 20393923
Alignment:
Q  107 acttttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaacca 168  Q
    ||||||||| |||||| |||| |||||||||| |||| ||| |||||||||||| |||||||    
T  20393984 acttttaatgagttgactgcacaagttccaatataatattattatatttgcttccttaacca 20393923  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 45631421 - 45631485
Alignment:
Q  107 acttttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaaccaatg 171  Q
    ||||||||| ||||||||||| ||| ||||| |  ||||||||||||||| ||| ||||||||||    
T  45631421 acttttaatgagttgattgcacaagatccaacgcgatgttactatatttgtttccttaaccaatg 45631485  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 24355828 - 24355887
Alignment:
Q  117 agttgattgcataagttccaatgtaatgttactatatttgcttctttaaccaatgtcttg 176  Q
    |||||| |||| |||||||||||  || |||||||||||||||| ||||||| |||||||    
T  24355828 agttgaatgcacaagttccaatgcgatattactatatttgcttccttaaccattgtcttg 24355887  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 34650878 - 34650937
Alignment:
Q  117 agttgattgcataagttccaatgtaatgttactatatttgcttctttaaccaatgtcttg 176  Q
    |||||| |||| || |||||||| ||  |||||||||||||||||||||||| |||||||    
T  34650878 agttgaatgcacaaattccaatgcaaaattactatatttgcttctttaaccattgtcttg 34650937  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 27598264 - 27598325
Alignment:
Q  107 acttttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaacca 168  Q
    |||||| | ||||||| |||| ||||||||||| ||  ||||||||||||||||| ||||||    
T  27598264 acttttgagaagttgaatgcacaagttccaatgcaagattactatatttgcttctctaacca 27598325  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 31708624 - 31708565
Alignment:
Q  109 ttttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaacca 168  Q
    ||||||| |||||| ||||||||||  ||||||||||||||||||||||||| |||||||    
T  31708624 ttttaatgagttgactgcataagttttaatgtaatgttactatatttgcttcattaacca 31708565  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 2242372 - 2242431
Alignment:
Q  109 ttttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaacca 168  Q
    ||||||| |||||||| || ||||||||| || |||||| ||||||||||||||||||||    
T  2242372 ttttaatgagttgattacacaagttccaacgtgatgttattatatttgcttctttaacca 2242431  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 5493786 - 5493845
Alignment:
Q  109 ttttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaacca 168  Q
    ||||||| |||||| |||||||||| ||||||||| |||||||||||| ||| |||||||    
T  5493786 ttttaatgagttgactgcataagtttcaatgtaatattactatatttgtttccttaacca 5493845  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 25173422 - 25173464
Alignment:
Q  125 gcataagttccaatgtaatgttactatatttgcttctttaacc 167  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||    
T  25173422 gcataagttccaatttaatgttactatatttggttccttaacc 25173464  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 36649232 - 36649296
Alignment:
Q  106 tacttttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaaccaat 170  Q
    |||||||||| |||||| |||  ||||| |||||| ||||| ||||||||||||  |||||||||    
T  36649232 tacttttaatgagttgactgcgcaagtttcaatgtgatgttgctatatttgctttcttaaccaat 36649296  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 7548299 - 7548236
Alignment:
Q  107 acttttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaaccaat 170  Q
    |||||||||||||||| |||| ||||| |||||| ||||||||||||||| ||  |||||||||    
T  7548299 acttttaataagttgactgcacaagtttcaatgtgatgttactatatttgttttcttaaccaat 7548236  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 14316287 - 14316348
Alignment:
Q  107 acttttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaacca 168  Q
    ||||||||| |||||||| || |||||||||||| || ||| |||||| | |||||||||||    
T  14316287 acttttaatgagttgattacacaagttccaatgtgattttattatattggtttctttaacca 14316348  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 34850643 - 34850598
Alignment:
Q  124 tgcataagttccaatgtaatgttactatatttgcttctttaaccaa 169  Q
    |||| |||||| ||||| ||||||||||||||||||| ||||||||    
T  34850643 tgcacaagttctaatgtgatgttactatatttgcttccttaaccaa 34850598  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 36016504 - 36016416
Alignment:
Q  106 tacttttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaaccaatgtcttg-gggcacccgttaacatt 193  Q
    ||||||| | ||||||| |||| ||||||| ||| ||| |||||||||||||||| ||||||| |||| || ||||||  |||||||||    
T  36016504 tacttttgagaagttgaatgcacaagttccgatgcaatattactatatttgcttccttaaccattgtcctgagggcactggttaacatt 36016416  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 44248574 - 44248622
Alignment:
Q  126 cataagttccaatgtaatgttactatatttgcttctttaaccaatgtct 174  Q
    ||||||||||||| || |||||||||||||| ||| ||||| |||||||    
T  44248574 cataagttccaatatattgttactatatttgattccttaactaatgtct 44248622  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 45431848 - 45431884
Alignment:
Q  207 aatggagcaaatgcaaatggagcaaagatggactcgt 243  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  45431848 aatggagcaaaggcaaatggagcaaagattgactcgt 45431884  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 32550627 - 32550539
Alignment:
Q  110 tttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaaccaatgtcttgg-ggcacccgttaacattaccc 197  Q
    ||||||||||||| |||| ||||| |||| | ||||||||||||||||| | ||||||| |||| ||| ||||||  ||||||| ||||    
T  32550627 tttaataagttgactgcacaagtttcaatatgatgttactatatttgctaccttaaccagtgtcctggaggcaccgattaacataaccc 32550539  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 30197243 - 30197331
Alignment:
Q  110 tttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaaccaatgtcttggggcacccgttaacattaccct 198  Q
    |||||| || ||| |||| ||||| |||||| ||||||||||||||| ||| ||||| | ||||  |||| ||| ||||||||||||||    
T  30197243 tttaatgaggtgactgcacaagtttcaatgtgatgttactatatttgtttccttaactagtgtcacggggtaccggttaacattaccct 30197331  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 22564991 - 22564934
Alignment:
Q  110 tttaataagttgattgcataagttccaatgtaatgttactatatttgcttctttaacc 167  Q
    |||||| || ||| |||||||||||||||||||| | ||||||||||| || ||||||    
T  22564991 tttaatgaggtgactgcataagttccaatgtaatctaactatatttgcatccttaacc 22564934  T

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