View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15363_high_15 (Length: 307)

Name: NF15363_high_15
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15363_high_15
NF15363_high_15
[»] chr6 (1 HSPs)
chr6 (1-290)||(24839544-24839833)


Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 24839544 - 24839833
Alignment:
Q  1 cttataatccacagatgacaaagactcaacccacttcaaattctcatcataatcagtatgcaaatcagaaaccacaaacacacgcaacccatcagtgtcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24839544 cttataatccacagatgacaaagactcaacccacttcaaattctcatcataatcagtatgcaaatcagaaaccacaaacacacgcaacccatcagtgtcc 24839643  T
Q  101 tctaaagcagaagacagtatttgttgtcttccaagattaaaccttttcattccataattgcagctaacagttacttgtttagagaaacatgaagattgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24839644 tctaaagcagaagacagtatttgttgtcttccaagattaaaccttttcattccataattgcagctaacagttacttgtttagagaaacatgaagattgat 24839743  T
Q  201 gattatgaggctgttgtgacagtgtaagagaaaaagggctaaacctcaccaccatcaatgctaaccaaaaatcttgatctacaatgattc 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24839744 gattatgaggctgttgtgacagtgtaagagaaaaagggctaaacctcaccaccatcaatgctaaccaaaaatcttgatctacaatgattc 24839833  T

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