View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_high_18 (Length: 279)
Name: NF15363_high_18
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_high_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 2016054 - 2015794
Alignment:
| Q |
19 |
atgcagtccaaaatccaataccaaatcaagaaaagagatcataatgatcattgcaatgagtgagtacaacacattctattattgatgcattcataacatg |
118 |
Q |
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| T |
2016054 |
atgcagtccaaaatccaataccaaatcaagaaaagagatcataatgatcattgcaatgagtgagtacaacacattctattattgatgcattcataacatg |
2015955 |
T |
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| Q |
119 |
ataatgtcaaacaattttattatcacgatattgttaaaattcgaaaggtgtttcattggcaaccaacactactattccgtgttatagactgttgttctga |
218 |
Q |
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| T |
2015954 |
ataatgtcaaacaattttattatcacgatattgttaaaattcgaaaggtgtttcattggcaaccaacactactattccgtgttatagactgttgttctga |
2015855 |
T |
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| Q |
219 |
attaagactcatttacccaaggcattccttcaagaccaaaaaagtggtattttgagatttt |
279 |
Q |
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| T |
2015854 |
aataagactcatttacccaaggcattccttcaagaccaaaaaagtggtatttagagatttt |
2015794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 40578726 - 40578805
Alignment:
| Q |
19 |
atgcagtccaaaatccaataccaaatcaagaaaagagatcataatgatcattgcaatgagtgagtacaacacattctatt |
98 |
Q |
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| T |
40578726 |
atgcagtccaaaatccagtaccaaatcaagtaaagagatcatgttaatcattgcactgagtgagtacaacacgttctatt |
40578805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 40596863 - 40596942
Alignment:
| Q |
19 |
atgcagtccaaaatccaataccaaatcaagaaaagagatcataatgatcattgcaatgagtgagtacaacacattctatt |
98 |
Q |
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| T |
40596863 |
atgcagtcaaaaatccattaccaaatcaaggaaagagtacatattggtcactgcattgagtgagtacaacgcattctatt |
40596942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 40572285 - 40572364
Alignment:
| Q |
19 |
atgcagtccaaaatccaataccaaatcaagaaaagagatcataatgatcattgcaatgagtgagtacaacacattctatt |
98 |
Q |
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||||||||||||||||| |||||||||||| ||||| ||||| | | || ||| |||||||||||||||| ||||||| |
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| T |
40572285 |
atgcagtccaaaatccagtaccaaatcaaggaaagatatcatgttaactatcgcattgagtgagtacaacacgttctatt |
40572364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 40567698 - 40567798
Alignment:
| Q |
19 |
atgcagtccaaaatccaataccaaatcaagaaaagagatcataatgatcattgcaatgagtgagtacaaca---cattctattattgatgcattcataac |
115 |
Q |
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||||||| ||||||||| ||||||| ||| |||||||| ||| |||||||| || ||||||||||||||| || |||||| | ||| |||||||||| |
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| T |
40567698 |
atgcagttcaaaatccagtaccaaacaaaggaaagagattatattgatcatttcattgagtgagtacaacaacacactctattctggattcattcataac |
40567797 |
T |
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| Q |
116 |
a |
116 |
Q |
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| T |
40567798 |
a |
40567798 |
T |
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