View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15363_high_2 (Length: 604)

Name: NF15363_high_2
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15363_high_2
NF15363_high_2
[»] chr2 (7 HSPs)
chr2 (466-500)||(5887568-5887602)
chr2 (467-502)||(42007310-42007345)
chr2 (464-498)||(18999324-18999358)
chr2 (465-502)||(35476585-35476622)
chr2 (468-508)||(29741047-29741087)
chr2 (466-506)||(31054045-31054085)
chr2 (468-500)||(36794803-36794835)
[»] chr5 (5 HSPs)
chr5 (465-502)||(39151021-39151058)
chr5 (468-508)||(6041933-6041973)
chr5 (467-502)||(24652409-24652444)
chr5 (468-502)||(4617861-4617895)
chr5 (466-502)||(42448208-42448244)
[»] chr7 (5 HSPs)
chr7 (467-498)||(5222672-5222703)
chr7 (465-498)||(4106550-4106583)
chr7 (466-498)||(1573940-1573972)
chr7 (466-502)||(9379988-9380024)
chr7 (466-502)||(40857435-40857471)
[»] chr6 (5 HSPs)
chr6 (467-498)||(32643827-32643858)
chr6 (468-502)||(7098805-7098839)
chr6 (469-497)||(2711304-2711332)
chr6 (466-498)||(15953231-15953263)
chr6 (466-502)||(28594166-28594202)
[»] chr4 (4 HSPs)
chr4 (467-502)||(5060505-5060540)
chr4 (468-508)||(29894409-29894449)
chr4 (468-508)||(31263590-31263630)
chr4 (468-508)||(31375112-31375152)
[»] chr3 (1 HSPs)
chr3 (467-502)||(32590970-32591005)
[»] chr8 (3 HSPs)
chr8 (468-498)||(16395372-16395402)
chr8 (468-502)||(41562441-41562475)
chr8 (466-498)||(23872810-23872842)
[»] chr1 (3 HSPs)
chr1 (468-502)||(36586250-36586284)
chr1 (465-498)||(17068148-17068181)
chr1 (466-502)||(39787745-39787781)


Alignment Details
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 500
Target Start/End: Original strand, 5887568 - 5887602
Alignment:
Q  466 ttatccagaagtcctaactcaactggtaaaatgtc 500  Q
    |||||||||||||||||||||||||||||||||||    
T  5887568 ttatccagaagtcctaactcaactggtaaaatgtc 5887602  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 502
Target Start/End: Complemental strand, 42007345 - 42007310
Alignment:
Q  467 tatccagaagtcctaactcaactggtaaaatgtcga 502  Q
    ||||||||||||||| ||||||||||||||||||||    
T  42007345 tatccagaagtcctagctcaactggtaaaatgtcga 42007310  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 498
Target Start/End: Original strand, 18999324 - 18999358
Alignment:
Q  464 gattatccagaagtcctaactcaactggtaaaatg 498  Q
    |||||||||||||||||||||||||||| ||||||    
T  18999324 gattatccagaagtcctaactcaactggcaaaatg 18999358  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 502
Target Start/End: Complemental strand, 35476622 - 35476585
Alignment:
Q  465 attatccagaagtcctaactcaactggtaaaatgtcga 502  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  35476622 attatccagaagtcctagctcaactggcaaaatgtcga 35476585  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 508
Target Start/End: Complemental strand, 29741087 - 29741047
Alignment:
Q  468 atccagaagtcctaactcaactggtaaaatgtcgatattat 508  Q
    |||||||||||||| ||||||||| |||||||||| |||||    
T  29741087 atccagaagtcctagctcaactggaaaaatgtcgaaattat 29741047  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 506
Target Start/End: Original strand, 31054045 - 31054085
Alignment:
Q  466 ttatccagaagtcctaactcaactggtaaaatgtcgatatt 506  Q
    ||||||||| |||||| ||||||||| ||||||||||||||    
T  31054045 ttatccagaggtcctagctcaactggcaaaatgtcgatatt 31054085  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 500
Target Start/End: Original strand, 36794803 - 36794835
Alignment:
Q  468 atccagaagtcctaactcaactggtaaaatgtc 500  Q
    |||||||||||||| ||||||||||||||||||    
T  36794803 atccagaagtcctagctcaactggtaaaatgtc 36794835  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 502
Target Start/End: Complemental strand, 39151058 - 39151021
Alignment:
Q  465 attatccagaagtcctaactcaactggtaaaatgtcga 502  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  39151058 attatccagaagtcctagctcaactggtaaaatgtcga 39151021  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 508
Target Start/End: Complemental strand, 6041973 - 6041933
Alignment:
Q  468 atccagaagtcctaactcaactggtaaaatgtcgatattat 508  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  6041973 atccagaagtcctagctcaactggtaaaatgtcgaaattat 6041933  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 502
Target Start/End: Complemental strand, 24652444 - 24652409
Alignment:
Q  467 tatccagaagtcctaactcaactggtaaaatgtcga 502  Q
    ||||||||||||||||||||||||| ||||||||||    
T  24652444 tatccagaagtcctaactcaactggcaaaatgtcga 24652409  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Complemental strand, 4617895 - 4617861
Alignment:
Q  468 atccagaagtcctaactcaactggtaaaatgtcga 502  Q
    |||||||||||||| ||||||||||||||||||||    
T  4617895 atccagaagtcctagctcaactggtaaaatgtcga 4617861  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 502
Target Start/End: Original strand, 42448208 - 42448244
Alignment:
Q  466 ttatccagaagtcctaactcaactggtaaaatgtcga 502  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  42448208 ttatccagaagtcctagctcaactggcaaaatgtcga 42448244  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 498
Target Start/End: Complemental strand, 5222703 - 5222672
Alignment:
Q  467 tatccagaagtcctaactcaactggtaaaatg 498  Q
    ||||||||||||||||||||||||||||||||    
T  5222703 tatccagaagtcctaactcaactggtaaaatg 5222672  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 498
Target Start/End: Original strand, 4106550 - 4106583
Alignment:
Q  465 attatccagaagtcctaactcaactggtaaaatg 498  Q
    ||||||||||||||||| ||||||||||||||||    
T  4106550 attatccagaagtcctagctcaactggtaaaatg 4106583  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 498
Target Start/End: Complemental strand, 1573972 - 1573940
Alignment:
Q  466 ttatccagaagtcctaactcaactggtaaaatg 498  Q
    |||||||||||||||| ||||||||||||||||    
T  1573972 ttatccagaagtcctagctcaactggtaaaatg 1573940  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 502
Target Start/End: Original strand, 9379988 - 9380024
Alignment:
Q  466 ttatccagaagtcctaactcaactggtaaaatgtcga 502  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  9379988 ttatccagaagtcctagctcaactggcaaaatgtcga 9380024  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 502
Target Start/End: Complemental strand, 40857471 - 40857435
Alignment:
Q  466 ttatccagaagtcctaactcaactggtaaaatgtcga 502  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  40857471 ttatccagaagtcctagctcaaatggtaaaatgtcga 40857435  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 498
Target Start/End: Complemental strand, 32643858 - 32643827
Alignment:
Q  467 tatccagaagtcctaactcaactggtaaaatg 498  Q
    ||||||||||||||||||||||||||||||||    
T  32643858 tatccagaagtcctaactcaactggtaaaatg 32643827  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Original strand, 7098805 - 7098839
Alignment:
Q  468 atccagaagtcctaactcaactggtaaaatgtcga 502  Q
    |||||||||||||| ||||||||||||||||||||    
T  7098805 atccagaagtcctagctcaactggtaaaatgtcga 7098839  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 497
Target Start/End: Original strand, 2711304 - 2711332
Alignment:
Q  469 tccagaagtcctaactcaactggtaaaat 497  Q
    |||||||||||||||||||||||||||||    
T  2711304 tccagaagtcctaactcaactggtaaaat 2711332  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 498
Target Start/End: Original strand, 15953231 - 15953263
Alignment:
Q  466 ttatccagaagtcctaactcaactggtaaaatg 498  Q
    |||||||||||||||| ||||||||||||||||    
T  15953231 ttatccagaagtcctagctcaactggtaaaatg 15953263  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 502
Target Start/End: Complemental strand, 28594202 - 28594166
Alignment:
Q  466 ttatccagaagtcctaactcaactggtaaaatgtcga 502  Q
    |||||||||||||||||||||||||| |||| |||||    
T  28594202 ttatccagaagtcctaactcaactggcaaaaggtcga 28594166  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 502
Target Start/End: Complemental strand, 5060540 - 5060505
Alignment:
Q  467 tatccagaagtcctaactcaactggtaaaatgtcga 502  Q
    |||||||||||||||||||||||| |||||||||||    
T  5060540 tatccagaagtcctaactcaactgataaaatgtcga 5060505  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 508
Target Start/End: Original strand, 29894409 - 29894449
Alignment:
Q  468 atccagaagtcctaactcaactggtaaaatgtcgatattat 508  Q
    |||||||||||||| ||||||||| |||||||||| |||||    
T  29894409 atccagaagtcctagctcaactggcaaaatgtcgaaattat 29894449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 508
Target Start/End: Complemental strand, 31263630 - 31263590
Alignment:
Q  468 atccagaagtcctaactcaactggtaaaatgtcgatattat 508  Q
    |||||||||||||| ||||||||| |||||||||| |||||    
T  31263630 atccagaagtcctagctcaactggcaaaatgtcgaaattat 31263590  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 508
Target Start/End: Original strand, 31375112 - 31375152
Alignment:
Q  468 atccagaagtcctaactcaactggtaaaatgtcgatattat 508  Q
    |||||||||||||||||||||||  |||||||||| |||||    
T  31375112 atccagaagtcctaactcaactgccaaaatgtcgaaattat 31375152  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 502
Target Start/End: Original strand, 32590970 - 32591005
Alignment:
Q  467 tatccagaagtcctaactcaactggtaaaatgtcga 502  Q
    ||||||||||||||| ||||||||||||||||||||    
T  32590970 tatccagaagtcctagctcaactggtaaaatgtcga 32591005  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 498
Target Start/End: Original strand, 16395372 - 16395402
Alignment:
Q  468 atccagaagtcctaactcaactggtaaaatg 498  Q
    |||||||||||||||||||||||||||||||    
T  16395372 atccagaagtcctaactcaactggtaaaatg 16395402  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Original strand, 41562441 - 41562475
Alignment:
Q  468 atccagaagtcctaactcaactggtaaaatgtcga 502  Q
    |||||||||||||| ||||||||||||||||||||    
T  41562441 atccagaagtcctagctcaactggtaaaatgtcga 41562475  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 498
Target Start/End: Complemental strand, 23872842 - 23872810
Alignment:
Q  466 ttatccagaagtcctaactcaactggtaaaatg 498  Q
    |||||||||||||||||||||||||| ||||||    
T  23872842 ttatccagaagtcctaactcaactggcaaaatg 23872810  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Original strand, 36586250 - 36586284
Alignment:
Q  468 atccagaagtcctaactcaactggtaaaatgtcga 502  Q
    ||||| |||||||||||||||||||||||||||||    
T  36586250 atccacaagtcctaactcaactggtaaaatgtcga 36586284  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 498
Target Start/End: Original strand, 17068148 - 17068181
Alignment:
Q  465 attatccagaagtcctaactcaactggtaaaatg 498  Q
    ||||||||||||||||| ||||||||||||||||    
T  17068148 attatccagaagtcctagctcaactggtaaaatg 17068181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 502
Target Start/End: Complemental strand, 39787781 - 39787745
Alignment:
Q  466 ttatccagaagtcctaactcaactggtaaaatgtcga 502  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  39787781 ttatccacaagtcctagctcaactggtaaaatgtcga 39787745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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