View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_high_5 (Length: 454)
Name: NF15363_high_5
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Complemental strand, 7947888 - 7947456
Alignment:
| Q |
8 |
ttcgggttattttcaagtgttaatccaccttggacacctatctaactggaccaccatagaattttctcaaaaaacatgttttacataatgccatatttag |
107 |
Q |
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| T |
7947888 |
ttcgggttattttcaagtgttaatccaccttggacacctatctaactggaccaccatagaattttctcaaaaaacatgttttacataatgccatatttag |
7947789 |
T |
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| Q |
108 |
aaatgctttgtttaaatatgtctggtctgttaaaaaatttaaattctaaacgtgataaattcactatcatacaccatttttagtacttgtctgacctttt |
207 |
Q |
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| T |
7947788 |
aaatgctttgtttaaatatgcctggtctgttaaaaaatttaaattctaaacgtgataaattcactatcatacaccatttttagtacttgtctgacctttt |
7947689 |
T |
|
| Q |
208 |
cgaaggcctggcgtgttagcctacttaaaagcctgacaaagtaaaatttcta-gtaggctaatggttaaattattgaannnnnnnngacagtatagttcc |
306 |
Q |
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| T |
7947688 |
cgaaggcctggcgtgttagcctacttaaaagcctgacaaagtaaaatttctacgtaggctaatggttaaattattgaa-attttttgacagtatagttcc |
7947590 |
T |
|
| Q |
307 |
tctattttccctaaatagtccagcaagcgacaaaact--cacacacacgaagtgttgataagtagggaattgggagttcaaacccgcgtctgagaaaatc |
404 |
Q |
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| T |
7947589 |
tttattttccctaaatagtccagcaagcgacaaaactcacacacacacgaagtgttgataagtagggaattggaagttcaaacccgcctctgagaaaatc |
7947490 |
T |
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| Q |
405 |
aaatgtctcctcagtcttttaccatatgagttgt |
438 |
Q |
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| T |
7947489 |
aaatgtctcctcagtcttttaccatatgagttgt |
7947456 |
T |
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