View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_high_9 (Length: 378)
Name: NF15363_high_9
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 6 - 181
Target Start/End: Complemental strand, 38311501 - 38311328
Alignment:
| Q |
6 |
gtcgaagaatattgattggttacatgtcatttggtgtgagctagcgctttgtgtcgggttgnnnnnnngaatgttaatttagagaagtgacagcgtcatc |
105 |
Q |
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| T |
38311501 |
gtcgcagaaaattgattggttacatgtcatttggtgtgagctagcgctttgtgtcgggttgtttttttgaatgttaatttagagaagtgacagcgtcatc |
38311402 |
T |
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| Q |
106 |
catcatccatcaaaaacacacgtaaatatatagtactggttttggcagcgggaatgagataatgttgaagtatata |
181 |
Q |
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| T |
38311401 |
catcatccatcaaaaacac--gtaaatatatagaactggttttggcagcgggaatgagataatgttgaagtatata |
38311328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 207 - 360
Target Start/End: Complemental strand, 38311330 - 38311177
Alignment:
| Q |
207 |
ataaaaaactaaccatttgggtaacgatgttcnnnnnnnnnnngaaagatgggtaacgatgttcttgttttgtcaaaaaccaatcatgtggaaaagatgt |
306 |
Q |
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| T |
38311330 |
ataaaaaactaaccatttgggtaacgatgttctttttttttttgaaagatgggtaaggatgttcttgttttgtcaaaaaccaatcatgtggaaaagatgt |
38311231 |
T |
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| Q |
307 |
tcttattttgtcaagcatcactttaaaatatatatattcattattgtttttcct |
360 |
Q |
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| T |
38311230 |
tcttattttgtcaagcatcactttaaaatatctatattcattattgtttttcct |
38311177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 38267595 - 38267549
Alignment:
| Q |
130 |
aatatatagtactggttttggcagcgggaatgagataatgttgaagt |
176 |
Q |
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| T |
38267595 |
aatatatagtactggttttggcagaaggaatgagatgatgttgaagt |
38267549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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