View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15363_low_1 (Length: 797)

Name: NF15363_low_1
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15363_low_1
NF15363_low_1
[»] chr8 (4 HSPs)
chr8 (18-512)||(13317684-13318180)
chr8 (646-779)||(13317503-13317633)
chr8 (234-307)||(36019154-36019227)
chr8 (105-151)||(36019036-36019082)
[»] chr4 (5 HSPs)
chr4 (27-303)||(55416877-55417150)
chr4 (18-156)||(48988907-48989043)
chr4 (70-156)||(26698102-26698188)
chr4 (48-152)||(48825352-48825455)
chr4 (24-156)||(53146986-53147116)
[»] chr2 (2 HSPs)
chr2 (25-177)||(9145584-9145739)
chr2 (61-156)||(26159657-26159752)
[»] chr1 (2 HSPs)
chr1 (23-142)||(52243390-52243509)
chr1 (239-296)||(6700653-6700710)
[»] chr5 (4 HSPs)
chr5 (18-185)||(513371-513541)
chr5 (206-291)||(9959476-9959560)
chr5 (67-135)||(35562637-35562704)
chr5 (476-570)||(13967453-13967548)
[»] chr3 (2 HSPs)
chr3 (18-153)||(3452236-3452371)
chr3 (116-156)||(49398-49438)
[»] chr7 (2 HSPs)
chr7 (47-147)||(34257587-34257687)
chr7 (256-306)||(4263384-4263434)
[»] chr6 (2 HSPs)
chr6 (105-152)||(12250963-12251010)
chr6 (51-152)||(1055661-1055762)


Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 512
Target Start/End: Complemental strand, 13318180 - 13317684
Alignment:
Q  18 gaacactagagtcttccaacaaaatggaaattctattcatcagcttaaagacaaaattaagcaacaatcattctggtggctggtggaaaatcatcctaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13318180 gaacactagagtcttccaacaaaatggaaattctattcatcagcttaaagacaaaattaagcaacaatcattctggtggctggtggcaaatcatcctaat 13318081  T
Q  118 tttgcttttaattaccacacatggtggcttaatcctcttc---gtttgggagttgctacttagcttcttttcttttcaannnnnnnggtgctcttagccg 214  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  13318080 tttgcttttaattaccacacatggtggcttaatcctcttctgtgtttgggagttgctacttagcttcttttcttttcaatttttttggtgctcttagccg 13317981  T
Q  215 agccagttgtggctttagcgctaattttcgttgtttttggaaacttaatgtaacatatactttcttttcttagttcttctctggcactccttgaccttgt 314  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  13317980 agccagctgtggctttagcgctaattttcgttgtttttggaaacttaatgtaacatatactttcttttcttagttctcctctggcattccttgaccttgt 13317881  T
Q  315 gctcgagagattaaactttaaggtaatttaatccattttaccttcttnnnnnnnnttaagcaaatattattttactttgtttctattcggttgtatatcc 414  Q
    ||| |||||| |||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  13317880 gcttgagagactaaaatttaaggtaatttaatccattttaccttcttaaaaaaaattaagcaaatattattttactttgtttctattcggttgtatatcc 13317781  T
Q  415 tccattatcaactggtttgttccctaatttttcctagattgtttcttaacttcatcatgttgcttagattgtatcatcatgaagctttccaacaagtt 512  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13317780 tccattatcaactggtttgttccctaa-ttttcctaaattgtttcttaacttcatcatgatgcttagattgtatcatcatgaagctttccaacaagtt 13317684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 646 - 779
Target Start/End: Complemental strand, 13317633 - 13317503
Alignment:
Q  646 cttgattgtcttgaataatcttcaaggaaagaagactctatgtgacttttgcttctttctatgatgtttgagaaagttctcaatctccggtattggctca 745  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13317633 cttgattgtcttgaat---cttcaaggaaagaagactctatgtgacttttgcttctttctatgatgtttgagaaagttctcaatctccggtattggctca 13317537  T
Q  746 ctaatttccctaatccttgatgtaggtggttttt 779  Q
    ||||||||||||||||||||||||||||||||||    
T  13317536 ctaatttccctaatccttgatgtaggtggttttt 13317503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 36019154 - 36019227
Alignment:
Q  234 gctaattttcgttgtttttggaaacttaatgtaacatatactttcttttcttagttcttctctggcactccttg 307  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||| ||||||||||| || || |||||||||    
T  36019154 gctagttttcgttgtttttgaaaacttgatgtaacatatactttctcttcttagttctcctttgacactccttg 36019227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 36019036 - 36019082
Alignment:
Q  105 aaatcatcctaattttgcttttaattaccacacatggtggcttaatc 151  Q
    |||||||||||| |||||||||||||| |||||||||||| ||||||    
T  36019036 aaatcatcctaactttgcttttaattatcacacatggtggtttaatc 36019082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 27 - 303
Target Start/End: Original strand, 55416877 - 55417150
Alignment:
Q  27 agtcttccaacaaaatggaaattctattcatcagcttaaagacaaaattaagcaacaatcattctggtggctggtggaaaatcatcctaattttgctttt 126  Q
    ||||||||||||||| | ||||| |||||||||||||| ||| |||||||||| |||||  ||||||||| ||  || ||||||||||||||||||||||    
T  55416877 agtcttccaacaaaaagaaaattttattcatcagcttatagataaaattaagctacaattcttctggtggttgaaggcaaatcatcctaattttgctttt 55416976  T
Q  127 aattaccacacatggtggcttaatcctc---ttcgtttgggagttgctacttagcttcttttcttttcaannnnnnnggtgctcttagccgagccagttg 223  Q
    |||||||||||||||||||||||| |||   || |||||||||| |||||||||||||||||  |||| |       |||| |||| | |||||  ||||    
T  55416977 aattaccacacatggtggcttaattctcttgtttgtttgggagtagctacttagcttctttttgtttc-agttttttggtgttctttggcgagc--gttg 55417073  T
Q  224 tggctttagcgctaattttcgttgtttttggaaacttaatgtaacatatactttcttttcttagttcttctctggcactc 303  Q
    |||||||||||||| |||||  || ||||||||| ||| ||||||||||  ||| | ||||||||||| ||||| |||||    
T  55417074 tggctttagcgctagttttctatg-ttttggaaaattattgtaacatat--tttatcttcttagttctcctctgacactc 55417150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 48988907 - 48989043
Alignment:
Q  18 gaacactagagtcttccaacaaaatggaaattctattcatcagcttaaagacaaaattaagcaacaatcattctggtggctggtggaaaatcatcctaat 117  Q
    |||| ||||||||||||||||||| |||||| |||||  | | |||  ||||||  ||||  ||||||||||||||||| ||  ||  ||||||||||||    
T  48988907 gaactctagagtcttccaacaaaagggaaatactattagttaacttttagacaa--ttaaaaaacaatcattctggtggttgaaggccaatcatcctaat 48989004  T
Q  118 tttgcttttaattaccacacatggtggcttaatcctctt 156  Q
    ||||||||| ||||||| |||||||| ||||| ||||||    
T  48989005 tttgcttttcattaccatacatggtgacttaaccctctt 48989043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 26698102 - 26698188
Alignment:
Q  70 aaaattaagcaacaatcattctggtggctggtggaaaatcatcctaattttgcttttaattaccacacatggtggcttaatcctctt 156  Q
    ||||||||||  ||||| ||||||||| ||  |  ||||||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  26698102 aaaattaagcttcaatccttctggtggttgaagccaaatcatcctaattttgcttttaattatcacatgtggtggcttaatcctctt 26698188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 48825455 - 48825352
Alignment:
Q  48 ttctattcatcagcttaaagacaaaattaagcaacaatcattctggtggctggtggaaaatcatcctaattttgcttttaattaccacacatggtggctt 147  Q
    ||||||| |||||||| | ||||||||||||  |||||| || |||||| ||  || ||||||||||||||||| ||||||||||||||  | |||||||    
T  48825455 ttctattaatcagcttga-gacaaaattaaggtacaatctttttggtggttgaaggcaaatcatcctaattttgtttttaattaccacatgtcgtggctt 48825357  T
Q  148 aatcc 152  Q
    |||||    
T  48825356 aatcc 48825352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 53147116 - 53146986
Alignment:
Q  24 tagagtcttccaacaaaatggaaattctattcatcagcttaaagacaaaattaagcaacaatcattctggtggctggtggaaaatcatcctaattttgct 123  Q
    |||||| ||||||||||||||   ||||||| |||||| |   ||||||||||| | |||||  ||||||||  ||   | |||||||| ||||||||||    
T  53147116 tagagttttccaacaaaatgggctttctattaatcagcatgtggacaaaattaaactacaatttttctggtgattga--gcaaatcatcataattttgct 53147019  T
Q  124 tttaattaccacacatggtggcttaatcctctt 156  Q
    ||||||||||| |  ||||||||||||||||||    
T  53147018 tttaattaccatatgtggtggcttaatcctctt 53146986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 25 - 177
Target Start/End: Original strand, 9145584 - 9145739
Alignment:
Q  25 agagtcttccaacaaaatggaaattctattcatcagcttaaagacaaaattaagcaacaatcattctggtggctggtggaaaatcatcctaattttgctt 124  Q
    ||||||||||||||||  || ||||||||| ||||||||  ||| ||||||||||  ||||| || |||||| ||  || |||||| |||||||||||||    
T  9145584 agagtcttccaacaaacggggaattctattaatcagcttctagataaaattaagctccaatctttttggtggttgaaggcaaatcaccctaattttgctt 9145683  T
Q  125 ttaattaccacacatggtggcttaatcctctt---cgtttgggagttgctacttag 177  Q
    ||||||| |||| |||||||||||||||||||    |||||||||||| |||||||    
T  9145684 ttaattagcacaaatggtggcttaatcctcttttatgtttgggagttgttacttag 9145739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 26159752 - 26159657
Alignment:
Q  61 cttaaagacaaaattaagcaacaatcattctggtggctggtggaaaatcatcctaattttgcttttaattaccacacatggtggcttaatcctctt 156  Q
    |||| ||| ||||||||||  ||||| |||| |||||||  |  ||||||||||||||||||||||| ||| ||||  ||||||||||||||||||    
T  26159752 cttatagataaaattaagcttcaatccttctagtggctgaagacaaatcatcctaattttgcttttagttatcacatgtggtggcttaatcctctt 26159657  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 52243390 - 52243509
Alignment:
Q  23 ctagagtcttccaacaaaatggaaattctattcatcagcttaaagacaaaattaagcaacaatcattctggtggctggtggaaaatcatcctaattttgc 122  Q
    ||||||| ||||||||||| ||   ||||||| ||||||||   |||||||||||||  ||||| ||||||||||||  || |||||||||||||||| |    
T  52243390 ctagagttttccaacaaaaggggctttctattaatcagcttgtggacaaaattaagctccaatccttctggtggctgaaggcaaatcatcctaattttac 52243489  T
Q  123 ttttaattaccacacatggt 142  Q
     |||||||||||||||||||    
T  52243490 atttaattaccacacatggt 52243509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 6700653 - 6700710
Alignment:
Q  239 ttttcgttgtttttggaaacttaatgtaacatatactttcttttcttagttcttctct 296  Q
    ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  6700653 ttttcattgtttttggaaacttaatgtaatatatactttctcttcttagttctcctct 6700710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 513541 - 513371
Alignment:
Q  18 gaacactagagtcttccaacaaaatggaaattctattcatcagcttaaagacaaaattaagcaacaatcattctggtggctggtggaaaatcatcctaat 117  Q
    |||| ||||||||||||||||||| |||||||||||||||||   || ||| |||||||||| || ||| ||| ||||| ||  |  ||| ||| | |||    
T  513541 gaactctagagtcttccaacaaaaaggaaattctattcatcaatatatagataaaattaagctacgatccttccggtggttgaagacaaaccattcaaat 513442  T
Q  118 tttgcttttaattaccacacatggtggcttaatcctcttc---gtttgggagttgctacttagcttctttt 185  Q
    ||||||||||| || |||||||||||| ||||| |||||    | |||||||| ||||| |||||||||||    
T  513441 tttgcttttaaatatcacacatggtgggttaattctcttttgtgcttgggagtagctacctagcttctttt 513371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 9959476 - 9959560
Alignment:
Q  206 tcttagccgagccagttgtggctttagcgctaattttcgttgtttttggaaacttaatgtaacatatactttcttttcttagttct 291  Q
    ||||||||||||||  | ||| |||||||||| |||| ||||||||  ||||||| ||||||||||||| ||||||||||||||||    
T  9959476 tcttagccgagccaactatggttttagcgctagtttttgttgttttaagaaacttgatgtaacatatac-ttcttttcttagttct 9959560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 35562704 - 35562637
Alignment:
Q  67 gacaaaattaagcaacaatcattctggtggctggtggaaaatcatcctaattttgcttttaattaccac 135  Q
    ||||||||||||| |||||| ||| || |||||   |||||||||||||||||||||||||||||||||    
T  35562704 gacaaaattaagctacaatccttccgg-ggctgaaagaaaatcatcctaattttgcttttaattaccac 35562637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 476 - 570
Target Start/End: Complemental strand, 13967548 - 13967453
Alignment:
Q  476 gcttagattgtatcatcatgaagctttccaacaagttttcttcaaaactaagatgtctagcaaattattg-ggggtttggttaggcgaagagtttt 570  Q
    ||||||||||||| ||||||||| ||||||||||||| | ||  ||||| || || |||||||||| ||| |||||||| ||||||| || |||||    
T  13967548 gcttagattgtattatcatgaagttttccaacaagttatattggaaacttaggtgcctagcaaattgttgtggggtttgattaggcggagggtttt 13967453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 3452371 - 3452236
Alignment:
Q  18 gaacactagagtcttccaacaaaatggaaattctattcatcagcttaaagacaaaattaagcaacaatcattctggtggctggtggaaaatcatcctaat 117  Q
    |||| |||||| ||||||||||||  |||||| | ||||||| |||| | | |||||||||| |||||| |||| |||| ||  || ||| |||||||||    
T  3452371 gaactctagagccttccaacaaaaaagaaattatgttcatcaacttataaataaaattaagctacaatccttctagtggttgaaggcaaaccatcctaat 3452272  T
Q  118 tttgcttttaattaccacacatggtggcttaatcct 153  Q
    |||| ||||||||| ||||||||||||  |||||||    
T  3452271 tttgtttttaattatcacacatggtggtataatcct 3452236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 49398 - 49438
Alignment:
Q  116 attttgcttttaattaccacacatggtggcttaatcctctt 156  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  49398 attttgcttttaattaccacacatggtgacttaatcctctt 49438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 34257587 - 34257687
Alignment:
Q  47 attctattcatcagcttaaagacaaaattaagcaacaatcattctggtggctggtggaaaatcatcctaattttgcttttaattaccacacatggtggct 146  Q
    |||||||| |||| |||| ||||||||||||||  || || |||||||||  |  || |||||||||||| ||| |||||||||| ||||  ||||||||    
T  34257587 attctattaatcaacttatagacaaaattaagcttcagtcgttctggtggtcgaaggcaaatcatcctaactttacttttaattatcacatgtggtggct 34257686  T
Q  147 t 147  Q
    |    
T  34257687 t 34257687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 4263434 - 4263384
Alignment:
Q  256 aacttaatgtaacatatactttcttttcttagttcttctctggcactcctt 306  Q
    ||||| ||||||| | |||||||||||||| |||||||| |||||||||||    
T  4263434 aacttgatgtaacttctactttcttttctttgttcttctttggcactcctt 4263384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 12250963 - 12251010
Alignment:
Q  105 aaatcatcctaattttgcttttaattaccacacatggtggcttaatcc 152  Q
    |||||||| |||||||||||||||||| ||||  ||||||||||||||    
T  12250963 aaatcatcataattttgcttttaattatcacatgtggtggcttaatcc 12251010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 1055661 - 1055762
Alignment:
Q  51 tattcatcagcttaaagacaaaattaagcaacaatcattctggtggctggtggaaaatcatcctaattttgcttttaattaccacacatggtggcttaat 150  Q
    ||||||||| |||  |||||||||||||   ||||| |  |||||| ||  || || ||||||||||||||||||||||||  |||  ||||||||||||    
T  1055661 tattcatcaccttttagacaaaattaagttgcaatcttattggtggatgaaggcaactcatcctaattttgcttttaattattacatgtggtggcttaat 1055760  T
Q  151 cc 152  Q
    ||    
T  1055761 cc 1055762  T

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