View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_low_10 (Length: 397)
Name: NF15363_low_10
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 23 - 382
Target Start/End: Original strand, 35097668 - 35098021
Alignment:
| Q |
23 |
aattctcaagaaaaaatgacacacatagctttttgaaggacatagcttgtcattcttctaaagttcaaagggtaatttcgtaacaacaaaaacattcatt |
122 |
Q |
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| T |
35097668 |
aattctcaagaaaaaat---acacataactttttgaaggacatagcttgtcattcttctaaagttcaaagggtaatttcgtaacaacaaaaacattcatt |
35097764 |
T |
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| Q |
123 |
cnnnnnnnnnnnnnnnnnnnacactggcacaaaaaacataaacccttattcgctgaaccaaaacccattcatcaccattttcttcatcttctcgaacacc |
222 |
Q |
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| T |
35097765 |
catatattttttttttt---acactggcacaaaaaacataaacccttattcgctgaaccaaaacccattcatcaccattttcttcatcttctcgaacacc |
35097861 |
T |
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| Q |
223 |
ggcggcgacattctaagggcaaaatgggtattttcgaaccatacagagccatcggatgcatctccaccggtgtccctttctccgttcaacgactcaacac |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35097862 |
ggcggcgacattctaagggcaaaatgggtattttcgaaccatacagagccatcggatgcatctccaccggtgtccctttctccgttcaacgactcaacac |
35097961 |
T |
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| Q |
323 |
tgaaactttcgtcactgtttccgttggtaaagcttttcagattttcaactatgctaaact |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35097962 |
tgaaactttcgtcactgtttccgttggtaaagcttttcagattttcaactatgctaaact |
35098021 |
T |
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