View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_low_11 (Length: 394)
Name: NF15363_low_11
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 31691156 - 31690793
Alignment:
| Q |
20 |
atcataacataaactatgtttgaaaagtaaatatattcaaaatgataggaaaaactgtttgtttt-ttaacaagataaaagaaactgttaattaataact |
118 |
Q |
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| T |
31691156 |
atcataacataaactatgtttgaaaagtaaataaattcaaaatgataggaaaaactgttttttttcttaacaagataaaagaaactgttaattaataact |
31691057 |
T |
|
| Q |
119 |
tatattttatttcacatcatgtataatattagaatatacattgagatgcactcctttattactactttttgtgttctttttagttgtatcacattgccta |
218 |
Q |
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| T |
31691056 |
tatattttatttcacatcatgtataatattagaatatacattgagatgcactcctttattactactttttgtattctttttagttgtatcacattgccta |
31690957 |
T |
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| Q |
219 |
agtacgcaattcaggtgctaataaattgttggcaatgttggttgaatttggannnnnnnnacaatcacacagaaattgcttattacaagtgcaaccaata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31690956 |
agtacgcaattcaggtgctaataaattgttggcaatgttggttgaatttggaggggggggacaatcacacagaaattgcttattacaagtgcaaccaata |
31690857 |
T |
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| Q |
319 |
aaatatttttgtatacagtctaagtcatgttcacataagggatcaatgtgtctgcttgttgcct |
382 |
Q |
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| T |
31690856 |
aaatattgttgtatacagtctaagtcatgttcacataagcgatcaatgtgtctgcttgttgcct |
31690793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 122 - 247
Target Start/End: Original strand, 17760902 - 17761027
Alignment:
| Q |
122 |
attttatttcacatcatgtataatattagaatatacattgagatgcactcctttattactactttttgtgttctttttagttgtatcacattgcctaagt |
221 |
Q |
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|||||||||||||||||| |||| ||| |||||||||||| ||| || |||||||||| || ||||||| || |||||||||||||||||||| |||||| |
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| T |
17760902 |
attttatttcacatcatgcataacattggaatatacattgggatacaatcctttattattaatttttgtattatttttagttgtatcacattgtctaagt |
17761001 |
T |
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| Q |
222 |
acgcaattcaggtgctaataaattgt |
247 |
Q |
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||| || ||||||| |||||||||| |
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| T |
17761002 |
acgtaactcaggtggaaataaattgt |
17761027 |
T |
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