View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_low_13 (Length: 382)
Name: NF15363_low_13
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 40 - 369
Target Start/End: Original strand, 51216373 - 51216702
Alignment:
| Q |
40 |
ggctaaattttggtgagtttccttccaatcgaaactggaagttttgaacaattccttgtgaattgtgcatgatagtgttaaatcattcactatgtccaat |
139 |
Q |
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| T |
51216373 |
ggctgaattttggtgagtttccttccaatcgaaactggaagttttgaacaattccttgtgaattgtgcataatagtgttaaatcattcactatgtccaat |
51216472 |
T |
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| Q |
140 |
aacttgatgttttatattttgagtttttacaagccatgttgctcagatactctggataatttgttacaacttacaatagtacaattagaaatacaagcta |
239 |
Q |
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| T |
51216473 |
aacttgatgttttatattttgagtttttacaagccatgttgctcagatactctggataatttgttacaacttacaatagtacaattagaaatacaagcta |
51216572 |
T |
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| Q |
240 |
ttttcataccaaatatcttcatatatatttttcctggtaaaacaagatgttgagctcaagggtttaatgagtctcagttaagatcaaatcaattcgacac |
339 |
Q |
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| T |
51216573 |
ttttcataccaaatatcttcatatatatttttcctggtaaaacaagatgttgagctcaagggtttaatgagtctcagttaagatcaaatcaatccgacac |
51216672 |
T |
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| Q |
340 |
acctgagttcaatccttggctagaataatc |
369 |
Q |
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| T |
51216673 |
acctgagttcaatccttggctagaataatc |
51216702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 7156239 - 7156194
Alignment:
| Q |
3 |
tttggcttatgaaggagtatcgtaatgaagattcttgggctaaatt |
48 |
Q |
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| T |
7156239 |
tttggcttatgaaggagtatggaaatgaagattcttgggctaaatt |
7156194 |
T |
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