View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_low_15 (Length: 375)
Name: NF15363_low_15
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 52713739 - 52714106
Alignment:
| Q |
1 |
ttgacaaagcagcagttattacagaaaaggacacactcagtaacagatggagtgtatgcacagtgacacaagtggaagagttcaaatcattcattaaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52713739 |
ttgacaaagcagcagttattacagaaaaggacacactcagcaacagatggagtgtatgcacagtgacacaagtggaagagttcaaatcattcattaaaat |
52713838 |
T |
|
| Q |
101 |
ccttccagtgtgggcatctaccattgctcttgctatttctttcgctcaaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaactagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52713839 |
ccttccagtgtgggcatctaccattgctcttgctatttctttcgctcaaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaactagga |
52713938 |
T |
|
| Q |
201 |
aacaacttcgaaatcccgacaggttctgtccccgtctttggtgccatcaacggcctcatacttgtacctttctacgagagattcataatcccatttctcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52713939 |
aacaacttcgaaatcccgacaggttctgtccccgtctttggtgccatcaacggcctcatacttgtacctttctacgagagattcataatcccatttctcc |
52714038 |
T |
|
| Q |
301 |
gtaagtttaccggccaccaccgtggcatcacatcgttacaacgaatgggcgttgggcttttcatctca |
368 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52714039 |
gtaagtttaccggccaccaccgtggcatcacatcgttacaacgaatgggtgttgggcttttcatctca |
52714106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 52722761 - 52723128
Alignment:
| Q |
1 |
ttgacaaagcagcagttattacagaaaaggacacactcagtaacagatggagtgtatgcacagtgacacaagtggaagagttcaaatcattcattaaaat |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| | || |||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |
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| T |
52722761 |
ttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgacacaagtcgaagaattcaaatcattcgttaaaat |
52722860 |
T |
|
| Q |
101 |
ccttccagtgtgggcatctaccattgctcttgctatttctttcgctcaaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaactagga |
200 |
Q |
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||||||||| | ||| ||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
52722861 |
ccttccagtatcggcctctaccattgctcttgctatttctttcgctcaagtgtcaaccttctttcttagtcaagccagcatcatgaatagaaaactagga |
52722960 |
T |
|
| Q |
201 |
aacaacttcgaaatcccgacaggttctgtccccgtctttggtgccatcaacggcctcatacttgtacctttctacgagagattcataatcccatttctcc |
300 |
Q |
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||||| ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
52722961 |
aacaagttcgaaatcccaacaggttctgtccctgtctttgctgccatcaacggcctcatacttgtacctctctacgagagattaataatcccatttctcc |
52723060 |
T |
|
| Q |
301 |
gtaagtttaccggccaccaccgtggcatcacatcgttacaacgaatgggcgttgggcttttcatctca |
368 |
Q |
| |
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| || ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
52723061 |
gcaaatttacaggccatcaccgtggcatcacatcgttacaacgaatgggtgttgggctttttatctca |
52723128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 52699465 - 52699822
Alignment:
| Q |
1 |
ttgacaaagcagcagttattacagaaaaggacacactcagtaacagatggagtgtatgcacagtgacacaagtggaagagttcaaatcattcattaaaat |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| | || |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
52699465 |
ttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgacacaagtcgaagaattcaaatcattcattaaaat |
52699564 |
T |
|
| Q |
101 |
ccttccagtgtgggcatctaccattgctcttgctatttctttcgctcaaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaactagga |
200 |
Q |
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|||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||| ||| |||||||||||| |||||||| | ||| ||||| |
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| T |
52699565 |
ccttccagtgtgggcatctaccattgctatttctatctctttggctcaaatgtcaacctggtttctaagtcaagccaaaatcatgaacaaaaagctagg- |
52699663 |
T |
|
| Q |
201 |
aacaacttcgaaatcccgacaggttctgtccccgtctttggtgccatcaacggcctcatacttgtacctttctacgagagattcataatcccatttctcc |
300 |
Q |
| |
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|| ||||||||||| | || ||||| |||| |||| ||||| || | | ||||||||| |||| || || |||||||| ||||||||| |||||| |
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| T |
52699664 |
--taaattcgaaatcccaaatggatctgttaccgtgtttgctgccagcagcagtctcatacttatacccttatatgagagatttataatcccaattctcc |
52699761 |
T |
|
| Q |
301 |
gtaagtttaccggccaccaccgtggcatcacatcgttacaacgaatgggcgttgggctttt |
361 |
Q |
| |
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| || |||||||||||| ||| ||||||||||| |||||||||||||| ||||| ||||| |
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| T |
52699762 |
gaaaatttaccggccacagccgcggcatcacatccttacaacgaatgggagttggactttt |
52699822 |
T |
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