View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_low_16 (Length: 364)
Name: NF15363_low_16
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 79 - 271
Target Start/End: Complemental strand, 1567180 - 1566988
Alignment:
| Q |
79 |
gctttgcgcctactcttggcgacgatggaagttgtgtgcctatgcatattaacatatgttcatgagattacatacattcattggtttgtgagagtttttg |
178 |
Q |
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| T |
1567180 |
gctttgcgcctactcttggcgacgatggaagttgtgtgcctatgcatattaacatatgttcatgagattacatacattcattggtttgtgagactttttg |
1567081 |
T |
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| Q |
179 |
gatgagtttggattgacttattaatcacgataaataatgcttgtgttataaagcacacaataaactgtccatccaaacaaaccctaaaaatag |
271 |
Q |
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| T |
1567080 |
gatcagtttggattgacttattaatcacgataaataatgcttgtgttataaagcacacaataaactgtccatccaaataaaccctaaaaatag |
1566988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 1461181 - 1461425
Alignment:
| Q |
16 |
catagtattgtcgagaccaccgcgacaatggaagttttaatcctacgccatgcgatgatggcagctttgcgcctactcttggcgacgatggaagttgtgt |
115 |
Q |
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| T |
1461181 |
cataatattgttgagaccacggcaacaatggaagttttgttcctacgccatgtgatgatgccagctttgcgcttactcttggcgacgatggaagttgtgt |
1461280 |
T |
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| Q |
116 |
gcctatgcatattaacatatgttcatgagattacatacattcattggtttgtgagagtttttggatgagtttggattgacttattaatcacgataaataa |
215 |
Q |
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| T |
1461281 |
gcctatgcatattaacgt--------gagattatatacatacattggtttgtgagagtttttggatcagtttggattgactttttaatcacgataaataa |
1461372 |
T |
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| Q |
216 |
tgcttgtgttataaagcacacaataaactgtccatccaaacaaaccctaaaaa |
268 |
Q |
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| T |
1461373 |
cgcttgtgttataaagcacacaataaactgtccatccaaacaaaccctaaaaa |
1461425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 1555781 - 1555540
Alignment:
| Q |
16 |
catagtattgtcgagaccaccgcgacaatggaagttttaatcctacgccatgcgatgatggcagctttgcgcctactcttggcgacgatggaagttgtgt |
115 |
Q |
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| T |
1555781 |
catagtattgtcgagaccacggcgacaatggaagttttgttcctacggcat---attaacagatctttgagcctactcttggcgacgatggaagttgtgt |
1555685 |
T |
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| Q |
116 |
gcctatgcatattaacatatgttcatgagattacatacattcattggtttgtgagagtttttggatgagtttggattgacttattaatcacgataaataa |
215 |
Q |
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| T |
1555684 |
gcctatgcatattaacat--------gagattatatacatacattggtttgtgagactttttggatcagtttggattgacttattaatcacgataaataa |
1555593 |
T |
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| Q |
216 |
tgcttgtgttataaagcacacaataaactgtccatccaaacaaaccctaaaaa |
268 |
Q |
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| T |
1555592 |
tgcttgtgttataaagcacacaataaactgtccatccaaacaaaccctaaaaa |
1555540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 69 - 271
Target Start/End: Original strand, 1456155 - 1456349
Alignment:
| Q |
69 |
gatgatggcagctttgcgcctactcttggcgacgatggaagttgtgtgcctatgcatattaacatatgttcatgagattacatacattcattggtttgtg |
168 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||||| |||||||||||| |
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| T |
1456155 |
gatgatgccagcattgcgcctactcttggcgacgatggaagttgtgtgcctatgcatgttaacgt--------gagattatatacatacattggtttgtg |
1456246 |
T |
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| Q |
169 |
agagtttttggatgagtttggattgacttattaatcacgataaataatgcttgtgttataaagcacacaataaactgtccatccaaacaaaccctaaaaa |
268 |
Q |
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| T |
1456247 |
agagtttttggatcagtttggattgactttttaatcacgataaataaggcttgtgttataaagcacacaataaactgtccatccaaacaaaccctaaaaa |
1456346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 1567273 - 1567184
Alignment:
| Q |
16 |
catagtattgtcgagaccaccgcgacaatggaagttttaatcctacgccatgcgatgatggcagctttgcgcctactcttggcgacgatg |
105 |
Q |
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| T |
1567273 |
catagtattgtcgagaccaccgcgacaatggaagttttgttcctacgccatgcgatgatggcagctttgcgcctactcttggtgacgatg |
1567184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 1456371 - 1456431
Alignment:
| Q |
296 |
tgtgtgagggtaaattaaagggattgagtagttcatacactgcatcagattctttcatctc |
356 |
Q |
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| T |
1456371 |
tgtgtgagggtaaattaaagggattgagtagttcatacactgcatcagattctttcatctc |
1456431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 1566966 - 1566906
Alignment:
| Q |
296 |
tgtgtgagggtaaattaaagggattgagtagttcatacactgcatcagattctttcatctc |
356 |
Q |
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| T |
1566966 |
tgtgtgagggtaaattaaagggattgagtagttcatacactgcatcagattctttcatctc |
1566906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 1461449 - 1461509
Alignment:
| Q |
296 |
tgtgtgagggtaaattaaagggattgagtagttcatacactgcatcagattctttcatctc |
356 |
Q |
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| T |
1461449 |
tgtgtgagggtaaattaaggggattgagtagttcatacactgcatcagattctttcatctc |
1461509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 1555515 - 1555455
Alignment:
| Q |
296 |
tgtgtgagggtaaattaaagggattgagtagttcatacactgcatcagattctttcatctc |
356 |
Q |
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| T |
1555515 |
tgtgtgagggtaaattaatgggattgagtagttcatacactgcatcagattctttcatctc |
1555455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 1454582 - 1454657
Alignment:
| Q |
125 |
tattaacatatgttcatgagattacatacattcattggtttgtgagagtttttggatgagtttggattgacttatt |
200 |
Q |
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| T |
1454582 |
tattaacatatgttcatgagattatatacatacattggtttgtaagagtttttgggtcagtttggattgacttatt |
1454657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 1456072 - 1456153
Alignment:
| Q |
16 |
catagtattgtcgagaccaccgcgacaatggaagttttaatcctacgccatgcgatgatggcagctttgcgcctactcttgg |
97 |
Q |
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| T |
1456072 |
catagtattgtcgagaccacggcgacaatggaagttttgttcctacgccatgcggcgatgccagctttacgcctactcttgg |
1456153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 1454721 - 1454778
Alignment:
| Q |
299 |
gtgagggtaaattaaagggattgagtagttcatacactgcatcagattctttcatctc |
356 |
Q |
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|||| |||||||||||||||||||||| | ||||||||||||||||||||| |||||| |
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| T |
1454721 |
gtgacggtaaattaaagggattgagtattacatacactgcatcagattcttccatctc |
1454778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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