View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_low_17 (Length: 363)
Name: NF15363_low_17
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 27734718 - 27735048
Alignment:
| Q |
15 |
taggcaaccatttacgacatatctatcaaatcagattttggcagtgaccataacagagtttggccgtgaccctaactttcaaatgagattccatcgacca |
114 |
Q |
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| T |
27734718 |
taggcaaccatttacgacatatctatcaaatcagattttggcagtgaccataacagagtttggccgtgaccctaactttcaaatgagattccatcgacca |
27734817 |
T |
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| Q |
115 |
tggactttaggatgagttggatcaattaatttatcaatacagtgtattctaactgtatattctccagtcaccaaatacgtttatcaagacagtgtcgata |
214 |
Q |
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| T |
27734818 |
tggactttaggatgagttggatcaattaatttatcaatacagtgtattctaactgtatattctccagtcaccaaatacgtttatcaggacagtgtcgata |
27734917 |
T |
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| Q |
215 |
ttcacttctaactgaaaacaacaatttcattannnnnnnnnaataccattggtgaatgtatatagttacataggtttttagttttatggaatggagatga |
314 |
Q |
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| T |
27734918 |
tttacttctaactgaaaacaacaatttcattattttcttttaataccattggtgtatgtatatagttacataggtttttagttttatggaatggagatga |
27735017 |
T |
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| Q |
315 |
aagttgttggtttgttttttctggtggtatc |
345 |
Q |
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| T |
27735018 |
aagttgtaggtttgttttttcttgtggtatc |
27735048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 84 - 345
Target Start/End: Original strand, 27722822 - 27723082
Alignment:
| Q |
84 |
ccctaactttcaaatgagattccatcgaccatggactttaggatgagttggatcaattaatttatcaatacagtgtattctaactgtatattctccagtc |
183 |
Q |
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| T |
27722822 |
ccctaactttcaaatgagattccatcgaccatgaattctaaggtgagttggatcaattaattcatcaatacagtgt---cgataagcac-ttctaacttc |
27722917 |
T |
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| Q |
184 |
accaaatacgtttatcaagacagtgtcgatattcacttctaactgaaaacaacaatttcattannnnnnnnn----aataccattggtgaatgtatatag |
279 |
Q |
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| T |
27722918 |
atcaa-tacgcttatcaagacagtgtcaatattcacttttaactgaaaacagcaattcctttatttttatttttctaataccattggtgtatgtatatag |
27723016 |
T |
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| Q |
280 |
ttacataggtttttagttttatggaatggagatgaaagttgttggtttgttttttctggtggtatc |
345 |
Q |
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| T |
27723017 |
ttacataggtttctagttttatggaatggaggtgaaagttgttgatattttatttctggtggtatc |
27723082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 14680553 - 14680625
Alignment:
| Q |
87 |
taactttcaaatgagattccatcgaccatggactttaggatgagttggatcaattaatttatcaatacagtgt |
159 |
Q |
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| T |
14680553 |
taactttcaaatgagattccatcgaccatgaactatatgatgagttggatcaattaattcatcaatacagtgt |
14680625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 26092293 - 26092359
Alignment:
| Q |
166 |
actgtatattctccagtcaccaaatacgtttatcaagacagtgtcgatattcacttctaactgaaaa |
232 |
Q |
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| T |
26092293 |
actgcatattctcccgtcaccaaatatgtttatgaatacagtgtcgatattcacttctaactgaaaa |
26092359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 326
Target Start/End: Original strand, 14680738 - 14680793
Alignment:
| Q |
271 |
tgtatatagttacataggtttttagttttatggaatggagatgaaagttgttggtt |
326 |
Q |
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| T |
14680738 |
tgtatatatttacataggtttttagttttacagaatggaaatgcaagttgttggtt |
14680793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 26092388 - 26092430
Alignment:
| Q |
303 |
gaatggagatgaaagttgttggtttgttttttctggtggtatc |
345 |
Q |
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| T |
26092388 |
gaatggagatgcaagttgttggtttgttatttctggtggtatc |
26092430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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