View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_low_2 (Length: 667)
Name: NF15363_low_2
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_low_2 |
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| [»] scaffold1325 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 226 - 503
Target Start/End: Complemental strand, 32144204 - 32143928
Alignment:
| Q |
226 |
cctatctaacttttaaagaaagcttacagaaatacaatttgcctacaatatattttaatgtgaattattggggttcataagaagaaagaaggagaatatg |
325 |
Q |
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| T |
32144204 |
cctatctaacttttaaagaaagcttacagaaatacaatttgcctacaatatattttaatgtgaattattggggttcataagaagaaagatggagaatatg |
32144105 |
T |
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| Q |
326 |
tctctcaacgtttcaagatgtttgttgtaacttacttcaaaggtagataatctagatcacaatagtgcaattgtgtaaatgaactagtctttgctcaaag |
425 |
Q |
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| T |
32144104 |
tctctcaacgtttcaagatgtttgttgtaacttacttcaaaggtagataatctagatcacaatagtgcaattgtgtaaatgaactagtctttgctcaaag |
32144005 |
T |
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| Q |
426 |
ttgcatgtttatcatgcccttggcgttacgctgaaactagttttctcttgtaaataaaataaaacaatgtatgtagct |
503 |
Q |
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| T |
32144004 |
ttgcatgtttataatgcccttggcgttacgctgaaactagttttctcttgtaaat-aaataaaacaatgtatgtagct |
32143928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 498 - 659
Target Start/End: Complemental strand, 32143132 - 32142971
Alignment:
| Q |
498 |
gtagctatcaagtttatcctagataaggctatgaaaatgaaatggctgcgccaattgttttgccctagtctttttccattaccactacagatgaatgaga |
597 |
Q |
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| T |
32143132 |
gtagttatgaagtttatcctagataaggctatgaaaatgaaatggctgcgccaattgttttgccctagtctttttccattaccactacagatgaatgaga |
32143033 |
T |
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| Q |
598 |
aaacgatggttttgatactaaaccacatggattatgaaaacaacagtttccttctgatgatg |
659 |
Q |
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| T |
32143032 |
aaacgatggttttgatactaaaccacatggattatgaaaacaacagtttccttctgatgatg |
32142971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 32144388 - 32144226
Alignment:
| Q |
18 |
atctatatatagagtatcatgtgtatttatttaccatctttcatcaatcatccaataagaaatatgttaagaaatttttctttctaccaaactcaagctt |
117 |
Q |
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| T |
32144388 |
atctatatatagagtatcatgtgtatttatttaccatctttcatcaatcatccaataagaaatatgt-aagaaatttttcttt-taccaaactcaagctt |
32144291 |
T |
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| Q |
118 |
attttacttacaggataaatttcatctatttgatcacgtgatttctaatatgcttccatccctcc |
182 |
Q |
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| T |
32144290 |
attttacttacaagataaatttcatctatttgatcatgtgatttctaatatgcttccatccctcc |
32144226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1325 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1325
Description:
Target: scaffold1325; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 1316 - 1379
Alignment:
| Q |
298 |
gttcataagaagaaagaaggagaatatgtctctcaacgtttcaagatgtttgttgtaacttact |
361 |
Q |
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| T |
1316 |
gttcataagaaaaaagatggagaatatgtctctcaacgctcaaagatgtttattctaagttact |
1379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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