View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_low_20 (Length: 328)
Name: NF15363_low_20
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 317
Target Start/End: Original strand, 52713311 - 52713608
Alignment:
| Q |
20 |
cataggaaatttgacgcattcatgctgtcggcacattcatgactgttggatcaaggctgatcaataannnnnnnnaggaatgctacataacgagctcact |
119 |
Q |
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| T |
52713311 |
cataggaaatttgacgcattcatgctgtcggcacattcatgactgttggatcaaggctgatcaatatttttttttaggaatgctacataacgagctcacc |
52713410 |
T |
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| Q |
120 |
agttatcatatgatgtatcgaggcacattcattaccgttggtatgaggcagaataatccagattgcaatgtagaatttgattttaaatnnnnnnntatcg |
219 |
Q |
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| T |
52713411 |
agttatcatatgatgtatcgaggcacattcattaccgttggtatgaggcagaataatccagatttcaatgtagaatttgattttaaataaaaaaatatcg |
52713510 |
T |
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| Q |
220 |
aactagaaatttaaatcgtcgatcttgatcaaatgacctctaaagtactgatcgtgtgaatgtgtgaaattgttgtggttagatgatctagttttcat |
317 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52713511 |
aactagaaatttaaatcgtcgatcttgattaaatgacctctaaagtactgatcgtgtgaatgtgtgaaattgttgtggttagatgatctagttttcat |
52713608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 52722224 - 52722295
Alignment:
| Q |
246 |
gatcaaatgacctctaaagtactgatcgtgtgaatgtgtgaaattgttgtggttagatgatctagttttcat |
317 |
Q |
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||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||| |
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| T |
52722224 |
gatcaaatgaccttaaatgtactgatcgtatgaatgtgtgaaattgttgtgcttagatggtctaattttcat |
52722295 |
T |
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