View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_low_21 (Length: 317)
Name: NF15363_low_21
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_low_21 |
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| [»] scaffold0185 (1 HSPs) |
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| [»] scaffold0048 (3 HSPs) |
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Alignment Details
Target: scaffold0185 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 6899 - 7181
Alignment:
| Q |
20 |
gtcataaaacttgttacggctttgattgttttggtgtgtcaaagcataattattcgacgtataagaaagtaaccaacgccactcaatcgtctttgacaag |
119 |
Q |
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| T |
6899 |
gtcataaaacttgttacggctttgatttttttggtgtgtcaaagcataattattcgacgtataagaaagtaaccaaagccactcaatcgtctttgacaac |
6998 |
T |
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| Q |
120 |
tttatcttcagacagtccaaagttatcacaatcaaagatcatgtccaccaaagcaaaacatgagaaagaacctcttcgaggaagaccaatattagagaaa |
219 |
Q |
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| T |
6999 |
tttatcttcagatagtccaaagttatcacaaccaaagaaaatgtccaccaaaggaaaacatgagaaagaaactagccgaggaagcgcaatattagagaag |
7098 |
T |
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| Q |
220 |
caaaagaattttgagttttatgcaatttctttggttctcataagcttagtatttacggtgttttttgggaaactatttggaat |
302 |
Q |
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| T |
7099 |
caaaagaagtttgagttttatgcaatgtggttggttctcataagcttagtatttacggtgtgttttgggaaactatttggaat |
7181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 85596 - 85314
Alignment:
| Q |
20 |
gtcataaaacttgttacggctttgattgttttggtgtgtcaaagcataattattcgacgtataagaaagtaaccaacgccactcaatcgtctttgacaag |
119 |
Q |
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| T |
85596 |
gtcataaaacttgttacggctttgattgttttggtgtgtcaaagcataattattcgacgtataagaaagtaaccaacgccactcaatcgtctttgacaag |
85497 |
T |
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| Q |
120 |
tttatcttcagacagtccaaagttatcacaatcaaagatcatgtccaccaaagcaaaacatgagaaagaacctcttcgaggaagaccaatattagagaaa |
219 |
Q |
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| T |
85496 |
tttatcttcagataattcaacggtatcacaatcaaagaacatgtccaccaaaggaaaacatgagaaagaaactaaacaagaaagcgcaatattagagaaa |
85397 |
T |
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| Q |
220 |
caaaagaattttgagttttatgcaatttctttggttctcataagcttagtatttacggtgttttttgggaaactatttggaat |
302 |
Q |
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| T |
85396 |
caaaagaagtttgagtttcgtgcaatttgtttggttctaataagcttagtatttactgtgtttttcgggaaactatttggaat |
85314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 60242 - 60521
Alignment:
| Q |
20 |
gtcataaaacttgttacggctttgattgttttggtgtgtcaaagcataattattcgacgtataagaaagtaaccaacgccactcaatcgtctttgacaag |
119 |
Q |
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| T |
60242 |
gtcataaaacttgttacggctttgattgttttggtgtgtcaaaaaatatttattcaacgtataagaaagtagccaaagctactgaatcgtctttgacagc |
60341 |
T |
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| Q |
120 |
tttatcttcagacagtccaaagttatcacaatcaaagatcatgtccaccaaagcaaaacatgagaaagaacctcttcgaggaagaccaatattagagaaa |
219 |
Q |
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| T |
60342 |
tatatcttcagatagttcaaaggtatcacaatcaaagatcatgtccaccaaaggaaaacaagagaaagatacttgccgaggaagcacaataatagagaag |
60441 |
T |
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| Q |
220 |
caaaagaattttgagttttatgcaatttctttggttctcataagcttagtatttacggtgttttttgggaaactatttgg |
299 |
Q |
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| T |
60442 |
caaaagaattttgagttttatgcaatttctttggtactcataagcttagtatttactgtgttttttgggaaaatatttgg |
60521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 47634 - 47923
Alignment:
| Q |
20 |
gtcataaaacttgttacggctttgatt----gttttggtgtgtcaaagcataattattcgacgtataagaaagtaaccaacgccactcaatcgtctttga |
115 |
Q |
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| T |
47634 |
gtcataaaacttgttacggctttgattaattgttttggtgtgtcaaaaaatatttattcgacgtataagaaagtaaccaaagctacgcaatcgtctttgt |
47733 |
T |
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| Q |
116 |
caagtttatcttcagacagtccaaagttatcacaatcaaagatcatgtccaccaaagcaaaacatgagaaagaacctcttcgaggaagaccaatattaga |
215 |
Q |
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| T |
47734 |
caactttatcttcagatagttcaaaggtatcacaatcaaagatcacgtccaccaaaggaaaacatgagaaagatactagccgaagaagcgcaatattaga |
47833 |
T |
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| Q |
216 |
gaaacaaaagaattttgagttttatgcaatttctttggttctcataagcttagtatttacggtgttttttgggaaactatttggaatatt |
305 |
Q |
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| T |
47834 |
gaaataaaagaagtttgagtttcatgcaatttgtttggttctcataagattagtatttatggtgttttttgggaaactatttggaatatt |
47923 |
T |
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