View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_low_25 (Length: 281)
Name: NF15363_low_25
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 53434471 - 53434722
Alignment:
| Q |
19 |
attaattaccttcttaacactgtgcttaaaacataggcatgatctttacgaagggaaccatctattgaatccgtagctcccatatacacaatataaattt |
118 |
Q |
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| T |
53434471 |
attaattaccttcttaacactgtgcttaaaacataggcatgatctttacgaagggaaccatctattgaatccgtagctcccatatacacaatataaattt |
53434570 |
T |
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| Q |
119 |
gattttcattctttgatttagtagctaagtatgaccttgactctccaagaagaaggaagagtgagtaaaacattaatatcaataaaattggatttccttt |
218 |
Q |
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| T |
53434571 |
gattttcattctttgatttattagctaagtatgaccttgactctccaagaagaaggaagagtgagtaaaacactaatatcaataaaattggatttccttt |
53434670 |
T |
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| Q |
219 |
catgtttataattaagtactcttgaattgaacttagttagttttgatagtat |
270 |
Q |
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| T |
53434671 |
catgtttataattaagtactcttgaattgaacttagttagttttgatagtat |
53434722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 53426310 - 53426518
Alignment:
| Q |
18 |
aattaattaccttcttaacactgtgcttaaaacataggcatgatctttacgaagggaaccatctattgaatccgtagctcccatatacacaatataaatt |
117 |
Q |
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| T |
53426310 |
aattaagtacctttttaacactgtgtttaaaatatgggcatgatcttcgcgaagggaaccattagttgaatgtgaagctcccatatacacaatataaact |
53426409 |
T |
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| Q |
118 |
tgattttcattctttgatttagtagctaagtatgaccttgactctccaagaagaaggaagagtgagtaaaacattaatatcaataaaattggatttcctt |
217 |
Q |
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| T |
53426410 |
tgattgtcattctctgattgaggagttaaggatgatcttgactctccaaggaaaaggaagagtgagtaaaatattagtaccaatagaactgaatttcctt |
53426509 |
T |
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| Q |
218 |
tcatgttta |
226 |
Q |
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| T |
53426510 |
tcatgttta |
53426518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 26099399 - 26099604
Alignment:
| Q |
18 |
aattaattaccttcttaacactgtgcttaaaacataggcatgatctttacgaagggaaccatctattgaatccgtagctcccatatacacaatataaatt |
117 |
Q |
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||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||| |||||||| | ||||||| ||||||||||||| | |
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| T |
26099399 |
aattaattaccttcttaacaccatgtttaaaacatgatcatgatctttacgaagggaaccattagttgaatccacacctcccatgtacacaatataaact |
26099498 |
T |
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| Q |
118 |
tgattttcattctttgatttagtagctaagtatgaccttgactctccaagaagaaggaagagtgagtaaaacattaatatcaataaaattggatttcctt |
217 |
Q |
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|||||||||||||||| || ||||||||| |||| || ||||||| |||||||||||| |||||||| ||| |||||| ||||||||||||| || |
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| T |
26099499 |
tgattttcattctttggttgagtagctaaagatgattttaactctcc---aagaaggaagagagagtaaaatgttagtatcaagaaaattggatttcttt |
26099595 |
T |
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| Q |
218 |
tcatgttta |
226 |
Q |
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||||||||| |
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| T |
26099596 |
tcatgttta |
26099604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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