View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_low_32 (Length: 226)
Name: NF15363_low_32
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 3679658 - 3679839
Alignment:
| Q |
1 |
ttgaaggagataatttaagtaaacagtaattttgttataagctttatgccaagaatcatgttataacagatagcagaatgaaggtataaatcaacaagtc |
100 |
Q |
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| T |
3679658 |
ttgaaggagataatttaagtaaacagtaattttgttata-gctttatgccaagaatcatgttataacagatagcagaatgaagttataaatcaacaagtc |
3679756 |
T |
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| Q |
101 |
aaatgaaggaacttttgaagatattgaagtccacacacggatttcaacttttgaaaatatccaaagtaacaacataagctata |
183 |
Q |
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| T |
3679757 |
aaatgaaggaacttttgaagatattgaagtccacacacggatttcaacttttgaaaatatccaaagtaacaacataagctata |
3679839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 3703741 - 3703824
Alignment:
| Q |
1 |
ttgaaggagataatttaagtaaacagtaattttgttataagctttatgccaagaatcatg-ttataacagatagcagaatgaag |
83 |
Q |
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| T |
3703741 |
ttgaaggagataatttaagtaaacggtaattttgttataagctttatgccaaaaatcatgtttataacagatagcagaatgaag |
3703824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 3676074 - 3676118
Alignment:
| Q |
85 |
tataaatcaacaagtcaaatgaaggaacttttgaagatattgaag |
129 |
Q |
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| T |
3676074 |
tataaatcaacaagtcaaatgaaggaacttatgaagatattgaag |
3676118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 3695287 - 3695326
Alignment:
| Q |
85 |
tataaatcaacaagtcaaatgaaggaacttttgaagatat |
124 |
Q |
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| T |
3695287 |
tataaatcaacaagtcaaatgaaggaacttatgaagatat |
3695326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 3650449 - 3650497
Alignment:
| Q |
102 |
aatgaaggaacttttgaagatattgaagtccacacacggatttcaactt |
150 |
Q |
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| T |
3650449 |
aatgaaggaacttaggaagatattgaagtccagatacggatttcaactt |
3650497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 3707062 - 3707014
Alignment:
| Q |
102 |
aatgaaggaacttttgaagatattgaagtccacacacggatttcaactt |
150 |
Q |
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| T |
3707062 |
aatgaaggaacttaggaagatattgaagtccagatacggatttcaactt |
3707014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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