View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_low_35 (Length: 215)
Name: NF15363_low_35
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 39333594 - 39333761
Alignment:
| Q |
17 |
gaagagagttatgcagaatgaagatacctgtgtccaagtcagcgacatcaatgaatatgtcccatgccccatgaccatgcaaagtggcagtctcttctat |
116 |
Q |
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| T |
39333594 |
gaagagagttatgcagaatgaagatacctgtgtccaagtcagcgacatcaatgaatatgtcccatgccccatgaccatgcaaagtggcagtctcttctat |
39333693 |
T |
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| Q |
117 |
agagcttctgcatatccattatacacttggttggtaatttatttatatagatcccagcagagtcgtgg |
184 |
Q |
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| T |
39333694 |
agagcttctgcatatccattatacacttggttggtaatttatttatatagatcccagcagagtcgtgg |
39333761 |
T |
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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 12928904 - 12928845
Alignment:
| Q |
121 |
cttctgcatatccattatacacttggttggtaatttatttatatagatcccagcagagtc |
180 |
Q |
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| T |
12928904 |
cttctacatatccattatccacttggttggtaatttatttatacagatccaagcagagtc |
12928845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 12938182 - 12938122
Alignment:
| Q |
121 |
cttctgcatatccattatac-acttggttggtaatttatttatatagatcccagcagagtc |
180 |
Q |
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| T |
12938182 |
cttctacatatccattatcccacttggttggtaatttatttatacagatccaagcagagtc |
12938122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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