View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_low_36 (Length: 215)
Name: NF15363_low_36
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 52630608 - 52630790
Alignment:
| Q |
15 |
cacagacaaatacaagtaatcagtccaagacataggtgctaacccatactccaatgttgacttcagaacatgtatccataattcaccaccccaaacatcc |
114 |
Q |
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| T |
52630608 |
cacagacaaatacaagtaatcagtccaagacataggtgctaacccatactccaatgttgccttcagaacatgtatccataattcaccaccccaaacatcc |
52630707 |
T |
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| Q |
115 |
acatacatttctttctcccaaattagaggacccttaattcctacacctccttttcccatttcaatcaccactcctttcatcct |
197 |
Q |
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| T |
52630708 |
acatacatttctttctcccaaactagaggacccttaattcctacacctccttttcccatttcaatcaccactcctttcatcct |
52630790 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 17243465 - 17243437
Alignment:
| Q |
16 |
acagacaaatacaagtaatcagtccaaga |
44 |
Q |
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| T |
17243465 |
acagacaaatacaagtaatcagtccaaga |
17243437 |
T |
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