View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15363_low_5 (Length: 558)

Name: NF15363_low_5
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15363_low_5
NF15363_low_5
[»] chr4 (50 HSPs)
chr4 (46-440)||(35255306-35255702)
chr4 (165-327)||(56095158-56095320)
chr4 (96-323)||(32933883-32934104)
chr4 (177-327)||(13834465-13834615)
chr4 (177-327)||(51150978-51151128)
chr4 (195-327)||(45615619-45615752)
chr4 (178-283)||(1758467-1758571)
chr4 (178-327)||(26499279-26499429)
chr4 (461-558)||(35255364-35255462)
chr4 (199-347)||(40407477-40407626)
chr4 (165-327)||(312566-312729)
chr4 (165-327)||(38932622-38932785)
chr4 (178-323)||(6552405-6552551)
chr4 (178-284)||(12034382-12034488)
chr4 (178-284)||(13834327-13834433)
chr4 (197-328)||(7616908-7617039)
chr4 (342-440)||(13834334-13834432)
chr4 (186-284)||(32934140-32934238)
chr4 (188-283)||(8170962-8171057)
chr4 (178-253)||(40407668-40407743)
chr4 (222-312)||(48827953-48828044)
chr4 (178-284)||(11840034-11840140)
chr4 (188-284)||(17381550-17381646)
chr4 (197-284)||(46804774-46804861)
chr4 (178-284)||(17381284-17381390)
chr4 (180-253)||(12922168-12922241)
chr4 (342-439)||(32934141-32934238)
chr4 (198-284)||(4215167-4215253)
chr4 (197-251)||(20217486-20217540)
chr4 (186-284)||(31903485-31903583)
chr4 (186-284)||(32123784-32123881)
chr4 (199-253)||(40836928-40836982)
chr4 (178-284)||(56095020-56095126)
chr4 (203-284)||(924813-924894)
chr4 (343-440)||(40407640-40407736)
chr4 (223-327)||(47097346-47097451)
chr4 (184-252)||(35255305-35255373)
chr4 (174-250)||(55132571-55132647)
chr4 (199-250)||(46805050-46805101)
chr4 (516-555)||(56095158-56095197)
chr4 (228-258)||(24806521-24806551)
chr4 (186-284)||(35763066-35763164)
chr4 (178-248)||(45615821-45615891)
chr4 (223-284)||(8755832-8755892)
chr4 (200-253)||(46216963-46217016)
chr4 (186-279)||(50384358-50384451)
chr4 (342-397)||(8170748-8170804)
chr4 (197-253)||(27395680-27395736)
chr4 (173-253)||(35075616-35075696)
chr4 (197-249)||(46871544-46871596)
[»] chr7 (23 HSPs)
chr7 (117-327)||(8062829-8063036)
chr7 (116-347)||(38838583-38838813)
chr7 (165-327)||(1247484-1247646)
chr7 (183-312)||(25688960-25689090)
chr7 (175-327)||(30839857-30840010)
chr7 (181-327)||(5197909-5198051)
chr7 (178-284)||(46720017-46720123)
chr7 (178-281)||(25618160-25618263)
chr7 (178-251)||(18942737-18942810)
chr7 (230-284)||(8929503-8929557)
chr7 (175-284)||(5358204-5358313)
chr7 (174-253)||(39608612-39608691)
chr7 (178-284)||(38838466-38838571)
chr7 (239-327)||(18942876-18942965)
chr7 (192-283)||(20889419-20889510)
chr7 (223-309)||(27080911-27080998)
chr7 (223-309)||(27197303-27197390)
chr7 (188-251)||(29196763-29196826)
chr7 (186-284)||(14669241-14669339)
chr7 (189-251)||(24488253-24488315)
chr7 (342-440)||(25618019-25618116)
chr7 (195-253)||(39791842-39791900)
chr7 (217-253)||(30793170-30793206)
[»] chr2 (17 HSPs)
chr2 (175-327)||(7165702-7165855)
chr2 (230-327)||(17742514-17742611)
chr2 (205-327)||(20966043-20966158)
chr2 (185-284)||(7165570-7165670)
chr2 (165-327)||(41746464-41746627)
chr2 (178-284)||(15301587-15301692)
chr2 (178-284)||(40124264-40124370)
chr2 (178-284)||(6788486-6788592)
chr2 (186-327)||(31967506-31967648)
chr2 (179-253)||(43503033-43503107)
chr2 (230-283)||(19206503-19206556)
chr2 (215-284)||(34883935-34884004)
chr2 (516-556)||(17742571-17742611)
chr2 (186-284)||(20360303-20360402)
chr2 (186-284)||(39273351-39273449)
chr2 (185-258)||(11281358-11281431)
chr2 (201-282)||(18903171-18903252)
[»] chr8 (27 HSPs)
chr8 (116-327)||(4586689-4586898)
chr8 (178-327)||(7680828-7680978)
chr8 (165-270)||(41302618-41302723)
chr8 (165-327)||(36754705-36754868)
chr8 (260-327)||(41303050-41303117)
chr8 (173-312)||(33590087-33590227)
chr8 (175-253)||(3662313-3662391)
chr8 (178-284)||(41303151-41303257)
chr8 (178-282)||(7681012-7681116)
chr8 (345-440)||(3662323-3662418)
chr8 (197-312)||(1249113-1249230)
chr8 (342-440)||(41303152-41303250)
chr8 (179-284)||(18080183-18080287)
chr8 (178-258)||(2987171-2987250)
chr8 (188-255)||(10708363-10708430)
chr8 (175-253)||(28802280-28802358)
chr8 (293-334)||(2987010-2987051)
chr8 (175-284)||(42660069-42660178)
chr8 (178-213)||(3662508-3662543)
chr8 (186-253)||(17488224-17488291)
chr8 (178-284)||(6393784-6393888)
chr8 (175-253)||(7574369-7574446)
chr8 (175-213)||(21145708-21145746)
chr8 (178-284)||(28929525-28929630)
chr8 (198-251)||(14532452-14532505)
chr8 (223-255)||(35355299-35355331)
chr8 (287-327)||(42659941-42659981)
[»] chr3 (27 HSPs)
chr3 (165-347)||(41897959-41898139)
chr3 (226-327)||(43838486-43838588)
chr3 (178-284)||(30843804-30843910)
chr3 (175-284)||(14984404-14984512)
chr3 (175-284)||(34294105-34294214)
chr3 (175-284)||(40619190-40619299)
chr3 (178-243)||(30669357-30669422)
chr3 (178-249)||(43837083-43837154)
chr3 (178-253)||(46848401-46848476)
chr3 (178-327)||(50239758-50239907)
chr3 (199-284)||(17572002-17572087)
chr3 (178-243)||(51889757-51889822)
chr3 (177-284)||(621859-621964)
chr3 (178-226)||(23152064-23152112)
chr3 (178-284)||(12832041-12832145)
chr3 (292-327)||(37852918-37852953)
chr3 (175-253)||(21568564-21568642)
chr3 (178-284)||(26499985-26500091)
chr3 (199-253)||(45681418-45681472)
chr3 (178-251)||(257808-257881)
chr3 (165-225)||(5800473-5800533)
chr3 (175-284)||(21568298-21568407)
chr3 (203-276)||(23195730-23195803)
chr3 (342-387)||(40618933-40618978)
chr3 (197-253)||(1324509-1324565)
chr3 (197-253)||(25321719-25321775)
chr3 (342-426)||(43838824-43838908)
[»] chr1 (32 HSPs)
chr1 (178-325)||(27463725-27463873)
chr1 (181-284)||(9890698-9890801)
chr1 (224-327)||(31738327-31738430)
chr1 (178-327)||(49880048-49880197)
chr1 (119-281)||(8068897-8069058)
chr1 (178-284)||(27463907-27464013)
chr1 (188-282)||(45679514-45679608)
chr1 (187-327)||(40872683-40872821)
chr1 (230-283)||(52361952-52362005)
chr1 (186-317)||(16658221-16658353)
chr1 (178-253)||(50804266-50804341)
chr1 (173-243)||(36144780-36144850)
chr1 (196-253)||(2998897-2998954)
chr1 (178-253)||(39162406-39162481)
chr1 (195-253)||(10018720-10018778)
chr1 (175-221)||(32670043-32670089)
chr1 (179-284)||(27900620-27900725)
chr1 (178-243)||(31134765-31134830)
chr1 (179-284)||(33747270-33747375)
chr1 (178-226)||(32669785-32669833)
chr1 (196-283)||(10519519-10519606)
chr1 (297-327)||(7151951-7151981)
chr1 (202-280)||(14926308-14926386)
chr1 (179-253)||(35621592-35621666)
chr1 (181-283)||(38901483-38901585)
chr1 (180-253)||(1315595-1315668)
chr1 (342-422)||(6541272-6541350)
chr1 (180-253)||(6728027-6728100)
chr1 (179-284)||(33746801-33746906)
chr1 (97-133)||(31738464-31738500)
chr1 (516-556)||(49880157-49880197)
chr1 (184-284)||(51849554-51849654)
[»] chr6 (24 HSPs)
chr6 (176-327)||(25084901-25085053)
chr6 (181-328)||(26293372-26293520)
chr6 (193-327)||(21237172-21237307)
chr6 (176-284)||(25085085-25085193)
chr6 (178-284)||(10219537-10219643)
chr6 (178-284)||(19264722-19264827)
chr6 (178-284)||(10067721-10067827)
chr6 (186-270)||(6524852-6524936)
chr6 (223-326)||(17848691-17848795)
chr6 (178-253)||(21020851-21020926)
chr6 (178-284)||(21021093-21021199)
chr6 (181-253)||(9307494-9307566)
chr6 (178-220)||(516056-516098)
chr6 (175-253)||(9436771-9436849)
chr6 (175-284)||(33806910-33807019)
chr6 (228-284)||(4964288-4964344)
chr6 (185-253)||(22260371-22260438)
chr6 (178-284)||(33806650-33806756)
chr6 (116-149)||(17848582-17848615)
chr6 (178-251)||(27223681-27223754)
chr6 (234-283)||(28748036-28748085)
chr6 (230-282)||(9762615-9762667)
chr6 (342-398)||(22260412-22260468)
chr6 (224-284)||(24084624-24084684)
[»] chr5 (39 HSPs)
chr5 (178-327)||(11534784-11534934)
chr5 (178-324)||(11505200-11505347)
chr5 (178-324)||(11512594-11512741)
chr5 (178-324)||(11519970-11520117)
chr5 (178-324)||(11527378-11527525)
chr5 (180-327)||(11497846-11497994)
chr5 (178-253)||(16127050-16127125)
chr5 (178-253)||(42420559-42420634)
chr5 (175-284)||(6217643-6217752)
chr5 (165-312)||(27769923-27770071)
chr5 (186-317)||(28903774-28903906)
chr5 (186-317)||(28940169-28940301)
chr5 (178-284)||(917158-917264)
chr5 (178-284)||(11498026-11498132)
chr5 (188-282)||(27001388-27001482)
chr5 (175-251)||(29686423-29686499)
chr5 (200-279)||(19342521-19342600)
chr5 (209-284)||(31949280-31949355)
chr5 (342-401)||(37853246-37853305)
chr5 (178-284)||(11505382-11505488)
chr5 (178-284)||(11512776-11512882)
chr5 (178-284)||(11520152-11520258)
chr5 (178-284)||(11527560-11527666)
chr5 (178-284)||(11534966-11535072)
chr5 (178-215)||(2707818-2707855)
chr5 (178-327)||(9023236-9023386)
chr5 (178-284)||(14461772-14461878)
chr5 (178-284)||(23159029-23159135)
chr5 (189-251)||(32270679-32270741)
chr5 (179-249)||(37181053-37181123)
chr5 (180-253)||(7756703-7756776)
chr5 (223-284)||(9023418-9023478)
chr5 (516-556)||(11497954-11497994)
chr5 (516-556)||(11534894-11534934)
chr5 (340-404)||(16127093-16127157)
chr5 (340-404)||(22391736-22391800)
chr5 (179-219)||(32518129-32518169)
chr5 (224-284)||(37853246-37853306)
chr5 (197-258)||(38416057-38416120)
[»] scaffold0114 (2 HSPs)
scaffold0114 (165-327)||(34896-35059)
scaffold0114 (228-284)||(35091-35146)
[»] scaffold0284 (1 HSPs)
scaffold0284 (181-327)||(2505-2652)
[»] scaffold0252 (1 HSPs)
scaffold0252 (180-327)||(17227-17373)
[»] scaffold0211 (1 HSPs)
scaffold0211 (184-327)||(20122-20266)
[»] scaffold0045 (1 HSPs)
scaffold0045 (178-251)||(20837-20910)
[»] scaffold0329 (1 HSPs)
scaffold0329 (178-253)||(6196-6271)
[»] scaffold0050 (2 HSPs)
scaffold0050 (175-253)||(81593-81672)
scaffold0050 (178-284)||(81295-81401)
[»] scaffold0008 (5 HSPs)
scaffold0008 (178-248)||(80265-80335)
scaffold0008 (178-248)||(80758-80828)
scaffold0008 (178-248)||(81251-81321)
scaffold0008 (178-248)||(81744-81814)
scaffold0008 (178-248)||(82237-82307)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 46 - 440
Target Start/End: Complemental strand, 35255702 - 35255306
Alignment:
Q  46 gcactattaatcaacttaatattaataggttttgagtatcagagcggagatcaggggcggatacatttagaggctatgtggagctaaagccccacatcca 145  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35255702 gcactatcaatcaacttaatattaataggttttgagtatcagagcggagacgaggggcggaaacatttagaggctatgtggagctaaagccccacatcca 35255603  T
Q  146 acttccttaannnnnnnn-cattataaacaggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattt 244  Q
    |||||| ||          ||||||||||||| |||||||||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  35255602 acttccctattttttttttcattataaacagggtaatagttattttggtccctaaatatgtaacgagtagtcacaatagtctctcaatgtattaaaattt 35255503  T
Q  245 taaaatagtatctggttttgcactttattagtcaaaataggtctgaagtgacaataagt-aagtatattaaaagactaatatgatggtatttataaatta 343  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  35255502 taaaatagtatctgattttgcactttattagtcaaaataggtctgaagtgacaataagtaaagtatattaaaagactaatatgatagtatttataaatta 35255403  T
Q  344 ttttgactagcaaagtgcacaatcaaggtttatttttaaatttttatatattgagagactaatatagttactccatacacaataagggtccaaaata 440  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||| |||||||||||| |||| | | |||| ||||||||    
T  35255402 ttttgactagcaaagtgcacaatcaaggtctatttttaaattttgatacattgagggactattatagttactccttacatattcagggaccaaaata 35255306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 165 - 327
Target Start/End: Complemental strand, 56095320 - 56095158
Alignment:
Q  165 attataaacaggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttg 264  Q
    |||||||| ||| ||||| |||||||||||||| ||||||||||||||| ||||||| || ||||| ||||||||||||||||||| || |||| |||||    
T  56095320 attataaatagggtaataattattttggtcccttaatgtgtaacgagtagtcacaatagtatctcattgtattaaaattttaaaattgtctctgattttg 56095221  T
Q  265 cactttattagtcaaaataggtctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    |||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  56095220 cactttgttagtcaaaataggcttgaagtgacaataagtaagtatattaaaagactaatatga 56095158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 96 - 323
Target Start/End: Original strand, 32933883 - 32934104
Alignment:
Q  96 tcaggggcggatacatttagaggctatgtggagctaaagccccacatccaacttccttaannnnnnnncattataaacaggataatagttattttggtcc 195  Q
    ||||||||||||  ||| ||||||||||||| |||||||||||||||||||||||| ||          |||||||  |   ||||| |||||||||||     
T  32933883 tcaggggcggatgtattaagaggctatgtggggctaaagccccacatccaacttccctattttttatttattataattatagtaataattattttggtct 32933982  T
Q  196 ctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaataggtctgaagtga 295  Q
    |||||||||||| ||||| ||| |||  ||||||||| |||||||||||||||||      || |||||||||||||||||||||||||   ||||||||    
T  32933983 ctgaatgtgtaatgagtagtcataata-tctctcaatatattaaaattttaaaatt-----tgattttgcactttattagtcaaaatagccttgaagtga 32934076  T
Q  296 caataagtaagtatattaaaagactaat 323  Q
    ||| ||||||||||||||||||||||||    
T  32934077 caacaagtaagtatattaaaagactaat 32934104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 13834615 - 13834465
Alignment:
Q  177 ataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagt 276  Q
    ||||||||||||| ||||| ||||||||||| ||||| ||||||  |||| | |||||||||||||||||||||||| |||| |||| ||||| ||||||    
T  13834615 ataatagttatttaggtcc-tgaatgtgtaatgagtagtcacaacagtcttttaatgtattaaaattttaaaatagtctctgattttacacttcattagt 13834517  T
Q  277 caaaatag-gtctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    ||||||||  | | ||||||||||||||||||||||| || |||||||||||    
T  13834516 caaaatagtttttaaagtgacaataagtaagtatattgaaggactaatatga 13834465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 51151128 - 51150978
Alignment:
Q  177 ataatagttattttggtccctgaatgtgtaacgagtaatcacaat-ggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattag 275  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||   |||||||||||||||||||||||||||||| |||| |||| |||| | || |    
T  51151128 ataatagttattttggtccttgaatgtgtaacgagtagtcacaataaatctctcaatgtattaaaattttaaaatagtctctgatttt-cactctgttgg 51151030  T
Q  276 tcaaaataggtctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    |||||||||  |  ||||||||||||||||||||||| ||  ||||||||||    
T  51151029 tcaaaatagtccctaagtgacaataagtaagtatattgaagtactaatatga 51150978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 195 - 327
Target Start/End: Original strand, 45615619 - 45615752
Alignment:
Q  195 cctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag-gtctgaagt 293  Q
    |||||||||||||  | || ||||||  |||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||  | ||||||    
T  45615619 cctgaatgtgtaattaatagtcacaacagtctttcaatgtattaaaattttaaaatagtctctgattttgcactttattagtcaaaatagtttttgaagt 45615718  T
Q  294 gacaataagtaagtatattaaaagactaatatga 327  Q
    ||||||||||||||||||| || |||||| ||||    
T  45615719 gacaataagtaagtatattgaaggactaaaatga 45615752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 1758571 - 1758467
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    |||||||||||| ||||| ||||||| |||  |||||||||||| ||||||||||||||||||||||||| ||||| |||| |||| || ||||||||||    
T  1758571 taatagttattt-ggtccttgaatgtttaataagtaatcacaatagtctctcaatgtattaaaattttaagatagtttctgatttttcattttattagtc 1758473  T
Q  278 aaaata 283  Q
    ||||||    
T  1758472 aaaata 1758467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 178 - 327
Target Start/End: Original strand, 26499279 - 26499429
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| |||||||| |||||||||||||  |||| |||||||  ||||| |||||||||||||| ||||||| ||  || ||||  ||||| ||||||    
T  26499279 taatagtcattttggttcctgaatgtgtaaaaagtagtcacaataatctcttaatgtattaaaattctaaaataataaatgattttatactttgttagtc 26499378  T
Q  278 aaaataggtc-tgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    ||||||| || |||| ||| ||| |||||||||||| || |||||||||||    
T  26499379 aaaatagctcatgaaatgataattagtaagtatattgaatgactaatatga 26499429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 461 - 558
Target Start/End: Original strand, 35255364 - 35255462
Alignment:
Q  461 ttaaaaatagaatttgattgtacacttggctagtcataataatttataaattgcatcatagtagtcttttaatata-tttacttattgtcacttcagac 558  Q
    |||||||||||  |||||||| ||||| |||||||| ||||||||||||||   |||||| ||||||||||||||| ||||||||||||||||||||||    
T  35255364 ttaaaaatagaccttgattgtgcactttgctagtcaaaataatttataaatactatcatattagtcttttaatatactttacttattgtcacttcagac 35255462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 199 - 347
Target Start/End: Original strand, 40407477 - 40407626
Alignment:
Q  199 aatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaa-tagtatctggttttgcactttattagtcaaaataggtctgaagtgaca 297  Q
    ||||||||||||||| |||| ||  | ||| |||| ||||||||||||||| |||| | || |||| |||||| |||||||||||||   ||||||||||    
T  40407477 aatgtgtaacgagtagtcacgataatgtcttaatgaattaaaattttaaaaatagtgtttgattttacactttgttagtcaaaatagtcttgaagtgaca 40407576  T
Q  298 ataagtaagtatattaaaagactaatatgatggtatttataaattatttt 347  Q
    |||||||| ||||||||||||  ||||||||  |||| | ||||||||||    
T  40407577 ataagtaattatattaaaagatcaatatgataatattaacaaattatttt 40407626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 165 - 327
Target Start/End: Original strand, 312566 - 312729
Alignment:
Q  165 attataaacaggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttg 264  Q
    |||||||| | | |||||||||||||| ||||||||| |||||  | || ||| |||  ||||||| |||||||||||| ||||||| ||  || |||||    
T  312566 attataaaaatggtaatagttattttgatccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattataaaataatacatgattttg 312665  T
Q  265 cactttattagtcaaaataggtc-tgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
     ||||||||||||| ||||   | |||||||||||||| |||||||||| || |||||||||||    
T  312666 tactttattagtcataataatccctgaagtgacaataaataagtatattgaaggactaatatga 312729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 165 - 327
Target Start/End: Original strand, 38932622 - 38932785
Alignment:
Q  165 attataaacaggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttg 264  Q
    |||||||| ||| ||||||| |||| ||| | |||||||||||  | || ||| ||| || | ||||||||||||||||||||||||||   || |||||    
T  38932622 attataaaaagggtaatagtcatttcggttcgtgaatgtgtaataaatagtcataatagtgtttcaatgtattaaaattttaaaatagtccatgattttg 38932721  T
Q  265 cactttattagtcaaaatagg-tctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
     || || ||||||| |||||  |||||||||||||||| |||||||||| || |||||||||||    
T  38932722 tacattgttagtcataatagtctctgaagtgacaataaataagtatattgaaggactaatatga 38932785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 178 - 323
Target Start/End: Original strand, 6552405 - 6552551
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    |||||||||||||||||| ||||| |||||  | |||||| |||  ||||||| |||||||||||| ||||||| |   || ||||| ||||| ||||||    
T  6552405 taatagttattttggtccgtgaatatgtaataaataatcataataatctctcagtgtattaaaattctaaaataatccatgattttgtactttgttagtc 6552504  T
Q  278 aaaataggtc-tgaagtgacaataagtaagtatattaaaagactaat 323  Q
    | |||||| | |||||||||||||| |||||||||| || |||||||    
T  6552505 ataataggccttgaagtgacaataaataagtatattgaaggactaat 6552551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 12034382 - 12034488
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||| ||| |||||||||| ||||||  |||||||| |||| || |  ||||| ||||||    
T  12034382 taatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctgattgtatactttgttagtc 12034481  T
Q  278 aaaatag 284  Q
    |||||||    
T  12034482 aaaatag 12034488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 13834327 - 13834433
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||| |||||||||||||||||||||||| |||||| || ||| ||| |||||| ||| ||||||||||||||||   || || |||||||| ||||||    
T  13834327 taataattattttggtccctgaatgtgtaaggagtaaccataatagtccctcaatttatcaaaattttaaaatagtccttgattgtgcactttgttagtc 13834426  T
Q  278 aaaatag 284  Q
    |||||||    
T  13834427 aaaatag 13834433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 197 - 328
Target Start/End: Complemental strand, 7617039 - 7616908
Alignment:
Q  197 tgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaataggtc-tgaagtga 295  Q
    ||||||||||| || |||| | ||| |||| | |||||||||||||||||||||||| | || ||||||||||| |||||||||||||  | | || |||    
T  7617039 tgaatgtgtaa-gaataattagaatagtcttttaatgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaaatagtccattaaatga 7616941  T
Q  296 caataagtaagtatattaaaagactaatatgat 328  Q
    |||||| |||||||||| || ||||||||||||    
T  7616940 caataaataagtatattgaatgactaatatgat 7616908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 440
Target Start/End: Complemental strand, 13834432 - 13834334
Alignment:
Q  342 tattttgactagcaaagtgcacaatcaaggtttatttttaaatttttatatattgagagactaatatagttactccatacacaataagggtccaaaata 440  Q
    ||||||||||| ||||||||||||||||||  |||||| ||||||| ||| |||||| ||||| ||| |||||||| |||||| | |||| ||||||||    
T  13834432 tattttgactaacaaagtgcacaatcaaggactattttaaaattttgataaattgagggactattatggttactccttacacattcagggaccaaaata 13834334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 32934238 - 32934140
Alignment:
Q  186 attttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    |||||||||||||||||||||| |||| | || ||| ||| |||||||||| |||||||||||||||| | || || ||||||||  ||||||||||||    
T  32934238 attttggtccctgaatgtgtaaggagtgaccataatagtccctcaatgtatcaaaattttaaaatagtttttgattgtgcactttgctagtcaaaatag 32934140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 188 - 283
Target Start/End: Complemental strand, 8171057 - 8170962
Alignment:
Q  188 tttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaata 283  Q
    ||||||||||| |||||||| ||||| ||| ||| ||| |||||||||| ||||||| |||||||| |||| ||||||| ||  ||||||||||||    
T  8171057 tttggtccctggatgtgtaatgagtagtcataatagtccctcaatgtataaaaatttcaaaatagtctctgattttgcaattcgttagtcaaaata 8170962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 40407743 - 40407668
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||| |||||||||||||||||||||||| |||||| || ||| |||  ||||||||| ||||||||||||||||    
T  40407743 taataattattttggtccctgaatgtgtaaggagtaaccataatagtccttcaatgtatcaaaattttaaaatagt 40407668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 222 - 312
Target Start/End: Original strand, 48827953 - 48828044
Alignment:
Q  222 ggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag-gtctgaagtgacaataagtaagtatatt 312  Q
    ||||| |||||||||| |||||||||||||||  ||| ||||| ||||||||||||  |||||   ||||||||||||||||||||||||||    
T  48827953 ggtctttcaatgtatttaaattttaaaatagtccctgattttgtactttattagtcgtaatagtccctgaagtgacaataagtaagtatatt 48828044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 11840140 - 11840034
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| ||||||||||||||||| |||| ||||| || |||| | | |||||||||| ||||||| ||||||||  ||| || |||||||| ||| ||    
T  11840140 taatagtcattttggtccctgaatgcgtaaggagtagtcgcaataggccctcaatgtatcaaaatttcaaaatagtccctgattgtgcactttgttaatc 11840041  T
Q  278 aaaatag 284  Q
    |||||||    
T  11840040 aaaatag 11840034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 17381646 - 17381550
Alignment:
Q  188 tttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    ||||||||||||||| ||||| |||| ||||||| ||| |||||||||| ||||||  ||||||||  ||| || |||||||| ||| |||||||||    
T  17381646 tttggtccctgaatgagtaacaagtagtcacaatagtccctcaatgtatcaaaattccaaaatagtccctgattgtgcactttgttaatcaaaatag 17381550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 284
Target Start/End: Original strand, 46804774 - 46804861
Alignment:
Q  197 tgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    ||||| ||||||||| | | ||||| ||| |||||||||| |||||||||||||||| |||| || | |||||| |||||||||||||    
T  46804774 tgaatatgtaacgagcagtgacaatagtccctcaatgtatcaaaattttaaaatagtctctgattgtacactttgttagtcaaaatag 46804861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 17381284 - 17381390
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| |||||||| |||||||||||| | |||| ||||||| |||  ||||||||| ||||||| |||| ||| |||| |  | |||||| ||||||    
T  17381284 taatagtcattttggttcctgaatgtgtagcaagtagtcacaatagtccttcaatgtatcaaaatttcaaaaaagtctctgatagtccactttgttagtc 17381383  T
Q  278 aaaatag 284  Q
    |||||||    
T  17381384 aaaatag 17381390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 12922168 - 12922241
Alignment:
Q  180 atagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||||||||||||||||||||||||||  |||| ||||||| || | |||||||||  |||||| ||||||||    
T  12922168 atagttattttggtccctgaatgtgtaataagtagtcacaatagtatttcaatgtatcgaaatttcaaaatagt 12922241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 439
Target Start/End: Original strand, 32934141 - 32934238
Alignment:
Q  342 tattttgactagcaaagtgcacaatcaaggtttatttttaaatttttatatattgagagactaatatagttactccatacacaataagggtccaaaat 439  Q
    ||||||||||||||||||||||||||||    |||||| ||||||| ||| |||||| ||||| ||| || ||||| |||||| | |||| |||||||    
T  32934141 tattttgactagcaaagtgcacaatcaaaaactattttaaaattttgatacattgagggactattatggtcactccttacacattcagggaccaaaat 32934238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 4215253 - 4215167
Alignment:
Q  198 gaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    |||||||||||||||| || |||| ||| ||||||| || |||||||||||||||| || | || |||||||  ||| |||||||||    
T  4215253 gaatgtgtaacgagtagtcgcaatagtccctcaatgaatcaaaattttaaaatagtctcggattgtgcacttcgttaatcaaaatag 4215167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 20217540 - 20217486
Alignment:
Q  197 tgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaata 251  Q
    ||||||| |||||||||  |||||| |||||||||||||| ||||||||||||||    
T  20217540 tgaatgtataacgagtagccacaatagtctctcaatgtatcaaaattttaaaata 20217486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 31903583 - 31903485
Alignment:
Q  186 attttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    ||||||||| ||||||||||||||| || | ||||| ||| ||||| |||| ||||||  |||||||| |||| |  |||||||| ||| |||||||||    
T  31903583 attttggtctctgaatgtgtaacgaatagttacaatagtccctcaacgtatcaaaattccaaaatagtctctgatcgtgcactttgttaatcaaaatag 31903485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 32123784 - 32123881
Alignment:
Q  186 attttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    |||||| ||| | ||||| ||| |||||| |||||| |||| |||||||||||||||||||||||||| | || ||||| ||||  ||||| |||||||    
T  32123784 attttgatccttaaatgtttaatgagtaaccacaatcgtct-tcaatgtattaaaattttaaaatagtctttgattttgtacttcgttagttaaaatag 32123881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 40836982 - 40836928
Alignment:
Q  199 aatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||||||||| |||||| ||| || ||||| ||||||||||||||||||||||||    
T  40836982 aatgtgtaacaagtaattacagtgatctcttaatgtattaaaattttaaaatagt 40836928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 56095020 - 56095126
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||| || |||||||||||||||||||||  ||||| |  | | ||| |||||||||| |||||||||||||||||| || || | ||||||  |||||    
T  56095020 taataattcttttggtccctgaatgtgtaagaagtaaccctagtagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtc 56095119  T
Q  278 aaaatag 284  Q
    || ||||    
T  56095120 aacatag 56095126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 924894 - 924813
Alignment:
Q  203 tgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    ||||||||||| | | ||| |||| ||||||||  ||||||||||||||||||||| || |||| | | |||||||||||||    
T  924894 tgtaacgagtagtaataatagtctttcaatgtagcaaaattttaaaatagtatctgattatgcattatgttagtcaaaatag 924813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 440
Target Start/End: Original strand, 40407640 - 40407736
Alignment:
Q  343 attttgactagcaaagtgcacaatcaaggtttatttttaaatttttatatattgagagactaatatagttactccatacacaataagggtccaaaata 440  Q
    ||||||||||||||| ||||||||||| |  |||||| ||||||| ||| |||||  ||||| ||| |||||||| |||||| | |||| ||||||||    
T  40407640 attttgactagcaaa-tgcacaatcaatgactattttaaaattttgatacattgaaggactattatggttactccttacacattcagggaccaaaata 40407736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 327
Target Start/End: Original strand, 47097346 - 47097451
Alignment:
Q  223 gtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag-gtctgaagtgacaataagtaagtatattaaaagacta 321  Q
    ||||||||||||||||||||||||||||| |   || ||||| ||||| | ||||| |  ||  ||| || ||||||||| ||||||||||||| |||||    
T  47097346 gtctctcaatgtattaaaattttaaaataattcatgattttgtactttgtaagtcatagcagtctctaaactgacaataaataagtatattaaaggacta 47097445  T
Q  322 atatga 327  Q
    ||||||    
T  47097446 atatga 47097451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 35255305 - 35255373
Alignment:
Q  184 ttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatag 252  Q
    |||||||||||||||||| ||||| ||||||  | ||| ||| |||||||||| ||||||| |||||||    
T  35255305 ttattttggtccctgaatatgtaaggagtaactataatagtccctcaatgtatcaaaatttaaaaatag 35255373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 55132647 - 55132571
Alignment:
Q  174 aggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaat 250  Q
    ||||||||||| |||||| || |||||||||||| ||| | ||| ||| || | ||||||||| |||||||||||||    
T  55132647 aggataatagtcattttgatctctgaatgtgtaaggagcagtcaaaatagtttttcaatgtatcaaaattttaaaat 55132571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 46805101 - 46805050
Alignment:
Q  199 aatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaat 250  Q
    ||||||||||||||| ||| ||| |||| ||||| |||||||||||||||||    
T  46805101 aatgtgtaacgagtagtcataatagtctttcaatatattaaaattttaaaat 46805050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 555
Target Start/End: Original strand, 56095158 - 56095197
Alignment:
Q  516 tcatagtagtcttttaatatatttacttattgtcacttca 555  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  56095158 tcatattagtcttttaatatacttacttattgtcacttca 56095197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 258
Target Start/End: Original strand, 24806521 - 24806551
Alignment:
Q  228 tcaatgtattaaaattttaaaatagtatctg 258  Q
    |||||||||||||||||||||||||||||||    
T  24806521 tcaatgtattaaaattttaaaatagtatctg 24806551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 35763066 - 35763164
Alignment:
Q  186 attttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    ||||| ||| |||||||||||||||||| ||||||| |||    || |||| ||||||  ||||||||||| | || |||||||| ||| |||||||||    
T  35763066 attttcgtctctgaatgtgtaacgagtagtcacaatagtcatcgaacgtatcaaaattcaaaaatagtatcggattatgcactttgttaatcaaaatag 35763164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 45615891 - 45615821
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaa 248  Q
    ||||| |||||||||||||||||||||||| |||| | || ||| ||| |||||||| |  ||||||||||    
T  45615891 taataattattttggtccctgaatgtgtaaggagtgaccataatagtccctcaatgtttcgaaattttaaa 45615821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 8755832 - 8755892
Alignment:
Q  223 gtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    |||||||||| ||||||| |||||||||||| | || ||||||| ||| |||||||||||||    
T  8755832 gtctctcaatttattaaa-ttttaaaatagtttttgattttgcattttgttagtcaaaatag 8755892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 46216963 - 46217016
Alignment:
Q  200 atgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||||||| || || | ||||| |||||||||||||| ||||||||||||||||    
T  46216963 atgtgtaaggaatagtaacaatagtctctcaatgtatcaaaattttaaaatagt 46217016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 279
Target Start/End: Original strand, 50384358 - 50384451
Alignment:
Q  186 attttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaa 279  Q
    |||||||| ||||||||||||| || ||  || ||| ||  | |||||||||||||||| |||||||| |||| || |||||| | ||||||||    
T  50384358 attttggttcctgaatgtgtaatgattagccataatagtaccccaatgtattaaaatttcaaaatagtctctgattgtgcactatgttagtcaa 50384451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 397
Target Start/End: Complemental strand, 8170804 - 8170748
Alignment:
Q  342 tattttgactagcaaagtgcacaatcaaggtttatttttaaattttt-atatattga 397  Q
    ||||||||||| |||||||||||||||| |  |||||| |||||||| |||||||||    
T  8170804 tattttgactaacaaagtgcacaatcaaagactattttgaaatttttgatatattga 8170748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 27395736 - 27395680
Alignment:
Q  197 tgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||||||||| ||||||||| |||  || || ||| ||||||||||||||||||||    
T  27395736 tgaatgtgtaatgagtaatcataataatcactaaatatattaaaattttaaaatagt 27395680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 35075616 - 35075696
Alignment:
Q  173 caggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||| ||||||||||||||||| || ||| ||||| ||||| |||||||  | | | ||||| | ||||||||||||||||    
T  35075616 cagggtaatagttattttggtcgctaaatatgtaatgagtagtcacaataatatttgaatgtgtcaaaattttaaaatagt 35075696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 46871544 - 46871596
Alignment:
Q  197 tgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaa 249  Q
    ||||||||||||||||| ||| | | |||||||||| |||| |||||||||||    
T  46871544 tgaatgtgtaacgagtagtcagattagtctctcaatatattgaaattttaaaa 46871596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 117 - 327
Target Start/End: Complemental strand, 8063036 - 8062829
Alignment:
Q  117 ggctatgtggagctaaagccccacatccaacttccttaannnnnnnncattataaacaggataatagttattttggtccctgaatgtgtaacgagtaatc 216  Q
    |||||||||| |||||||||||||||||||||||| ||          || ||||| | | |||||||||||||||||| ||||||||||||||||| ||    
T  8063036 ggctatgtggggctaaagccccacatccaacttccctattttttttt-atcataaatatggtaatagttattttggtccttgaatgtgtaacgagtagtc 8062938  T
Q  217 acaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaataggtctgaagtgacaataagtaagtatattaaaa 316  Q
    ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||    |||||||||||| ||||||||||||||||    
T  8062937 acaatagtctgtcaatgtattaaaattttaaaatagtatctgattttgcactt--ttagtcaaaataaccttgaagtgacaatgagtaagtatattaaaa 8062840  T
Q  317 gactaatatga 327  Q
    |||||||||||    
T  8062839 gactaatatga 8062829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 116 - 347
Target Start/End: Complemental strand, 38838813 - 38838583
Alignment:
Q  116 aggctatgtggagctaaagccccacatccaacttccttaannnnnnnncattataaacaggataatagttattttggtccctgaatgtgtaacgagtaat 215  Q
    |||||||||||||||||||||||| ||||||||| | ||          |||||||  ||| ||||| |||||||||||||||||||||||||||||| |    
T  38838813 aggctatgtggagctaaagccccatatccaactttcctattttttatt-attataattagggtaataattattttggtccctgaatgtgtaacgagtagt 38838715  T
Q  216 cacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaataggtctgaagtgacaataagtaagtatattaaa 315  Q
    ||||||  ||| |||||||||||||||||||||||||| |||| ||||||| ||| |||||||||||||  |||||| |||||   ||||||||||||||    
T  38838714 cacaatattctatcaatgtattaaaattttaaaatagtctctgattttgcattttgttagtcaaaatagccctgaagagacaactggtaagtatattaaa 38838615  T
Q  316 agactaatatgatggtatttataaattatttt 347  Q
    ||||||| |||||  |||| | ||||||||||    
T  38838614 agactaacatgataatattaacaaattatttt 38838583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 165 - 327
Target Start/End: Original strand, 1247484 - 1247646
Alignment:
Q  165 attataaacaggataatagttatttt-ggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggtttt 263  Q
    |||||||  ||| ||||||||||||| ||||||||||| ||||||||||| ||||||| || ||| |||||||||||||||||||||||| | || ||||    
T  1247484 attataattagggtaatagttatttttggtccctgaatatgtaacgagtagtcacaatagtttcttaatgtattaaaattttaaaatagtct-tgatttt 1247582  T
Q  264 gcactttattagtcaaaataggtctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    || ||||  || |||||||||  ||||||||||||  |||| ||||||||||||||||||||||    
T  1247583 gcgctttgctaatcaaaatagccctgaagtgacaactagtatgtatattaaaagactaatatga 1247646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 183 - 312
Target Start/End: Original strand, 25688960 - 25689090
Alignment:
Q  183 gttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaat 282  Q
    ||||||||| | | ||||||||||| || |||||||||| ||||||||||||||||||||| ||||||| | |||| ||||||||||| ||||| |||||    
T  25688960 gttattttgattcttgaatgtgtaatgaataatcacaatagtctctcaatgtattaaaattctaaaataatttctgattttgcactttgttagttaaaat 25689059  T
Q  283 ag-gtctgaagtgacaataagtaagtatatt 312  Q
    ||   || || ||| ||||||||||||||||    
T  25689060 agtcccttaaatgataataagtaagtatatt 25689090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 327
Target Start/End: Complemental strand, 30840010 - 30839857
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttatta 274  Q
    |||||||||| |||||||||||||||||| |||||| || | ||||| ||||||||||||| || || |||||||||||  ||| ||||  | |||||||    
T  30840010 ggataatagtcattttggtccctgaatgtataacgaatagttacaatagtctctcaatgtaatataaatttaaaatagtccctgattttaaattttatta 30839911  T
Q  275 gtcaaaatag-gtctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    || |||||||  ||| || ||| ||||| |||||||| | || |||||||||||    
T  30839910 gttaaaatagtctctaaaatgataataaataagtatactgaaggactaatatga 30839857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 181 - 327
Target Start/End: Original strand, 5197909 - 5198051
Alignment:
Q  181 tagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaa 280  Q
    |||||||||||||| || ||||| |||| | |||||||| |     || ||||||||| |||||||||||||| |||  ||||||||||| |||||||||    
T  5197909 tagttattttggtctctaaatgtttaacaaataatcacagt-----cttaatgtattagaattttaaaatagtttctcattttgcactttgttagtcaaa 5198003  T
Q  281 atag-gtctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    ||||   ||||||  ||||||| |||||||||| ||||||||||||||    
T  5198004 atagtccctgaagcaacaataaataagtatattgaaagactaatatga 5198051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 46720123 - 46720017
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| ||| |||| ||||||||  |||| |||| ||||||| ||| ||||||||||| |||||||||||| |||| || || |||||||| ||||||    
T  46720123 taatagtcattatggttcctgaatgaataacaagtagtcacaatagtccctcaatgtattgaaattttaaaatggtatttgattgtgcactttgttagtc 46720024  T
Q  278 aaaatag 284  Q
    |||||||    
T  46720023 aaaatag 46720017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 25618263 - 25618160
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||| |||||||||| | |||||||||||||| || ||||| | || |  ||||||||||||||||||||||||| | || ||||||| ||| ||||||    
T  25618263 taataattattttggttcttgaatgtgtaacgattagtcacagtagttttgcaatgtattaaaattttaaaatagtttatgattttgcattttgttagtc 25618164  T
Q  278 aaaa 281  Q
    ||||    
T  25618163 aaaa 25618160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 18942737 - 18942810
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaata 251  Q
    ||||||| |||||||||||||||||||||| || || ||| ||| ||| |||||||||| ||||||||||||||    
T  18942737 taatagtcattttggtccctgaatgtgtaaggaatagtcataatagtcactcaatgtatcaaaattttaaaata 18942810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 8929503 - 8929557
Alignment:
Q  230 aatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    |||||||||||||||||||||||| | || ||||||||||| |||||||||||||    
T  8929503 aatgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaaatag 8929557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 5358204 - 5358313
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttatta 274  Q
    |||||||||| | |||  ||||| ||||||||| || || | ||||| |||  ||||||||| |||||||||||||||| |||| || || ||| |||||    
T  5358204 ggataatagtcactttcatccctaaatgtgtaatgaatagttacaatagtccttcaatgtatcaaaattttaaaatagtctctgattgtgtactctatta 5358303  T
Q  275 gtcaaaatag 284  Q
    ||||||||||    
T  5358304 gtcaaaatag 5358313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 39608691 - 39608612
Alignment:
Q  174 aggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||||||| | ||||| |||| ||||||||||| ||||| | ||||| || | ||||||||| ||||||||||||||||    
T  39608691 aggataataatcattttagtccttgaatgtgtaaggagtagttacaatagtttttcaatgtatcaaaattttaaaatagt 39608612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 38838466 - 38838571
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||| ||||||||  |||||||||||||| |||||| |||||| |||  || |||| ||||||||||||||||||   || || ||||||||  |||||    
T  38838466 taataattattttgacccctgaatgtgtaaggagtaaccacaatagtccatcgatgt-ttaaaattttaaaatagtccttgattgtgcacttttctagtc 38838564  T
Q  278 aaaatag 284  Q
    |||||||    
T  38838565 aaaatag 38838571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 18942965 - 18942876
Alignment:
Q  239 aaattttaaaatagtatctggttttgcactttattagtcaaaataggtc-tgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    ||||| ||||||||| |||| ||||||| ||||||| ||||||||   | |||| |||||||||||||||||||| || || ||||||||    
T  18942965 aaattctaaaatagtctctgattttgcattttattaatcaaaataatccatgaaatgacaataagtaagtatattgaatgattaatatga 18942876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 283
Target Start/End: Complemental strand, 20889510 - 20889419
Alignment:
Q  192 gtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaata 283  Q
    ||||||||||||||||| ||||  |||||| ||| |||||||||| || |||| |||||| | |||| ||    ||||||||||||||||||    
T  20889510 gtccctgaatgtgtaacaagtagccacaatagtccctcaatgtatcaacatttcaaaataatctctgattgcatactttattagtcaaaata 20889419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 309
Target Start/End: Complemental strand, 27080998 - 27080911
Alignment:
Q  223 gtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaataggtc-tgaagtgacaataagtaagtat 309  Q
    |||||| |||||||||||||| ||||||||  | || |||| |||||| ||| |||||||||  | |||||||| |||||||||||||    
T  27080998 gtctctaaatgtattaaaattctaaaatagactttgatttttcactttgttattcaaaatagtccttgaagtgataataagtaagtat 27080911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 309
Target Start/End: Original strand, 27197303 - 27197390
Alignment:
Q  223 gtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaataggtc-tgaagtgacaataagtaagtat 309  Q
    |||||| |||||||||||||| ||||||||  | || |||| |||||| ||| |||||||||  | |||||||| |||||||||||||    
T  27197303 gtctctaaatgtattaaaattctaaaatagactttgatttttcactttgttattcaaaatagtccttgaagtgataataagtaagtat 27197390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 29196763 - 29196826
Alignment:
Q  188 tttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaata 251  Q
    ||||||||  ||||||||||||| || ||||||| || | ||||||||| ||||||||||||||    
T  29196763 tttggtcctcgaatgtgtaacgaatagtcacaatagtttttcaatgtatcaaaattttaaaata 29196826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 14669241 - 14669339
Alignment:
Q  186 attttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    |||||||||| ||||||||||||||||| ||||||   || ||||||  ||  |||| | |||||||| |||| || |||||| | |||||||||||||    
T  14669241 attttggtccttgaatgtgtaacgagtagtcacaacaatccctcaattaatcgaaatatcaaaatagtctctgattgtgcactatgttagtcaaaatag 14669339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 24488253 - 24488315
Alignment:
Q  189 ttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaata 251  Q
    ||||||||||||| | |||||||||| |||||| |||  | ||||||||| ||||||||||||    
T  24488253 ttggtccctgaatttataacgagtaaccacaatagtcctttaatgtattataattttaaaata 24488315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 440
Target Start/End: Complemental strand, 25618116 - 25618019
Alignment:
Q  342 tattttgactagcaaagtgcacaatcaaggtttatttttaaatttttatatattgagagactaatatagttactccatacacaataagggtccaaaata 440  Q
    |||||||||||| |||||||||||| ||||  |||||| ||||||| | | |||||  ||||| ||| ||| |||| |||||||||||||  |||||||    
T  25618116 tattttgactagaaaagtgcacaattaaggactattttaaaattttga-acattgatggactattatggttcctccttacacaataagggatcaaaata 25618019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 39791842 - 39791900
Alignment:
Q  195 cctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||||||||||||  |||| |||||| ||||||||||||||| |||||  ||||||||    
T  39791842 cctgaatgtgtaacaggtaaccacaatagtctctcaatgtattgaaattccaaaatagt 39791900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 30793206 - 30793170
Alignment:
Q  217 acaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||||||||||| |||||||| |||||||||||||||    
T  30793206 acaatggtctctaaatgtattgaaattttaaaatagt 30793170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 5e-48; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 175 - 327
Target Start/End: Complemental strand, 7165855 - 7165702
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttatta 274  Q
    |||||| |||||||||| ||||| ||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| |||| |||||||||||||||    
T  7165855 ggataacagttattttgatccctaaatgtgtaacgagtagtcacaatagtctttcaatgtattaaaattttaaaatagtctctgattttgcactttatta 7165756  T
Q  275 gtcaaaatag-gtctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    || |||||||  | ||||||||||||||||||||||||| ||||||||||||||    
T  7165755 gttaaaatagtctttgaagtgacaataagtaagtatattgaaagactaatatga 7165702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 17742514 - 17742611
Alignment:
Q  230 aatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaataggtctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    |||||||||||||||||||||||| |||| ||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||||||||||    
T  17742514 aatgtattaaaattttaaaatagtctctgattttgcactttgttagttaaaatagccctgaagtgacaataagtaagtatattaaaagactaatatga 17742611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 205 - 327
Target Start/End: Original strand, 20966043 - 20966158
Alignment:
Q  205 taacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaataggtctgaagtgacaataagta 304  Q
    ||||||||| | | ||| |||||||||| |||||||||||||||||||  | || ||||||||||| |||||||||||||       |||||||  ||||    
T  20966043 taacgagtagtgataatagtctctcaatctattaaaattttaaaatagcctatgattttgcactttgttagtcaaaatag-------gtgacaactagta 20966135  T
Q  305 agtatattaaaagactaatatga 327  Q
    |||||||||||||||||||||||    
T  20966136 agtatattaaaagactaatatga 20966158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 284
Target Start/End: Original strand, 7165570 - 7165670
Alignment:
Q  185 tattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaatttt-aaaatagtatctggttttgcactttattagtcaaaata 283  Q
    ||||||||||||||||||||||  |||||| || ||| |||||| ||||||||||| |||| ||||||||   || || |||||||||||||||||||||    
T  7165570 tattttggtccctgaatgtgtagggagtaaccataatagtctcttaatgtattaaatttttaaaaatagttcttgattgtgcactttattagtcaaaata 7165669  T
Q  284 g 284  Q
    |    
T  7165670 g 7165670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 165 - 327
Target Start/End: Complemental strand, 41746627 - 41746464
Alignment:
Q  165 attataaacaggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttg 264  Q
    |||||||| | | |||||| |||||||||| ||| ||||||||  | || ||| ||| ||||||||||||||| ||||| |||||||||   || |||||    
T  41746627 attataaaaaaggtaatagctattttggtctctggatgtgtaagaaatagtcataatagtctctcaatgtatttaaattctaaaatagttcatgattttg 41746528  T
Q  265 cactttattagtcaaaatag-gtctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
     ||||| |||| || |||||   ||||||||||||||| |||||||||| || | |||||||||    
T  41746527 tacttttttagacataatagtccctgaagtgacaataaataagtatattgaagggctaatatga 41746464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 15301692 - 15301587
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    |||||||||||||| ||| | |||||||||||| |||||||||| ||||||||||||||  |||||| |||||| | |||| || |||| |||  |||||    
T  15301692 taatagttattttgatccttaaatgtgtaacgactaatcacaatcgtctctcaatgtatcgaaatttcaaaataatctctgattgtgca-ttttctagtc 15301594  T
Q  278 aaaatag 284  Q
    |||||||    
T  15301593 aaaatag 15301587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 40124264 - 40124370
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| | |||||||| ||||||||||||||||| ||||||| |||  | |||||||  |||||||||||| || |||| || ||||||   ||||||    
T  40124264 taatagtcactttggtccttgaatgtgtaacgagtagtcacaatagtccattaatgtatcgaaattttaaaatggtctctgattgtgcactccgttagtc 40124363  T
Q  278 aaaatag 284  Q
    |||||||    
T  40124364 aaaatag 40124370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 6788592 - 6788486
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| |||||  ||| | |||||||||| | || ||| ||| |||  ||||||||| |||||||||||||||| |||| || |||||||| ||||||    
T  6788592 taatagtcattttcatccttaaatgtgtaacaaatagtcataatagtcattcaatgtatcaaaattttaaaatagtttctgattgtgcactttgttagtc 6788493  T
Q  278 aaaatag 284  Q
    | |||||    
T  6788492 agaatag 6788486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 327
Target Start/End: Complemental strand, 31967648 - 31967506
Alignment:
Q  186 attttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatagg 285  Q
    |||||||||||||||| |||||  | || ||| |||  ||||||| |||||||||||| ||||| | |   || ||||| ||||| ||||||| |||||     
T  31967648 attttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaagaatccatgattttgtactttgttagtcataatagt 31967549  T
Q  286 -tctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
     |||||||||||| |||  ||||||||| || |||||||||||    
T  31967548 ctctgaagtgacagtaaaaaagtatattgaaggactaatatga 31967506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 43503107 - 43503033
Alignment:
Q  179 aatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||||| |||||  ||||| ||| ||||||||||| | ||||| || | ||||||||||||||||||||||||||    
T  43503107 aatagtcatttttttcccttaatatgtaacgagtagttacaatagtttttcaatgtattaaaattttaaaatagt 43503033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 19206556 - 19206503
Alignment:
Q  230 aatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaata 283  Q
    ||||||| |||||||||||||||| |||| || |||||||| ||||||||||||    
T  19206556 aatgtatcaaaattttaaaatagtttctgattatgcactttgttagtcaaaata 19206503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 34883935 - 34884004
Alignment:
Q  215 tcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    ||||||| ||| |||||||||| |||||||||||||||| |||  || |||||| | |||||||||||||    
T  34883935 tcacaatagtccctcaatgtatcaaaattttaaaatagtctctaattgtgcactctgttagtcaaaatag 34884004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 516 - 556
Target Start/End: Complemental strand, 17742611 - 17742571
Alignment:
Q  516 tcatagtagtcttttaatatatttacttattgtcacttcag 556  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  17742611 tcatattagtcttttaatatacttacttattgtcacttcag 17742571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 20360303 - 20360402
Alignment:
Q  186 attttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaa-tagtatctggttttgcactttattagtcaaaatag 284  Q
    ||||||||| || ||||| ||||||||| ||||||| ||| ||||||| || ||||||  |||| ||||  |||||| | |||||| |||||||||||||    
T  20360303 attttggtctctaaatgtctaacgagtagtcacaatagtcactcaatgcatcaaaattgcaaaaatagttcctggttgtacactttgttagtcaaaatag 20360402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 39273449 - 39273351
Alignment:
Q  186 attttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    ||||||||| |||||||||||| |||||  |||||| ||| || |||||||| |||||| ||||| ||  ||||||  |||||| |||| || ||||||    
T  39273449 attttggtctctgaatgtgtaatgagtagccacaatagtccctaaatgtattgaaatttcaaaatggtccctggttccgcacttcattaatccaaatag 39273351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 11281358 - 11281431
Alignment:
Q  185 tattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctg 258  Q
    ||||||||| |||||||||||||| | ||||||||||  | | ||| | ||| |||||||||||||||| ||||    
T  11281358 tattttggtacctgaatgtgtaacaaataatcacaataatatttcattatatcaaaattttaaaatagtttctg 11281431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 18903252 - 18903171
Alignment:
Q  201 tgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaat 282  Q
    ||||||||||||| ||||||| |||  |||||||||  ||||| ||||||||| |||| || |||||| | ||| |||||||    
T  18903252 tgtgtaacgagtagtcacaatagtcattcaatgtatcgaaattctaaaatagtttctgattgtgcactatgttaatcaaaat 18903171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 116 - 327
Target Start/End: Original strand, 4586689 - 4586898
Alignment:
Q  116 aggctatgtggagctaaagccccacatccaacttccttaannnnnnnncattataaacaggataatagttattttggtccctgaatgtgtaacgagtaat 215  Q
    ||||||||||| ||||||||||||||||||||||||||||         |||||||  ||| |||||||||||||| ||| ||||||||||||||||| |    
T  4586689 aggctatgtggggctaaagccccacatccaacttccttaattttgtat-attataattagggtaatagttattttgatccttgaatgtgtaacgagtagt 4586787  T
Q  216 cacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaataggtctgaagtgacaataagtaagtatattaaa 315  Q
     ||||| |||||| |||||||||||||||||||||||| | || ||||||||||  ||||||||||||| |||||| ||||||  |||||||||| ||||    
T  4586788 tacaatagtctcttaatgtattaaaattttaaaatagtctatgattttgcacttcgttagtcaaaatagttctgaattgacaactagtaagtata-taaa 4586886  T
Q  316 agactaatatga 327  Q
    ||||||||||||    
T  4586887 agactaatatga 4586898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 178 - 327
Target Start/End: Original strand, 7680828 - 7680978
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    |||| ||||||||||||| | ||||| |||||||||||||||||  ||||||||| ||||||||||| |||||||| |||| ||||| ||||| ||| ||    
T  7680828 taatggttattttggtccataaatgtctaacgagtaatcacaatactctctcaatatattaaaatttaaaaatagtttctgattttgtactttgttactc 7680927  T
Q  278 aaaataggtc-tgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    | |||||  | |||| |||||||||||||| ||||| ||| ||||| ||||    
T  7680928 ataatagtccttgaaatgacaataagtaaggatattgaaatactaagatga 7680978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 165 - 270
Target Start/End: Original strand, 41302618 - 41302723
Alignment:
Q  165 attataaacaggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttg 264  Q
    |||||||| | | ||||||||||||||||   ||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||| | || |||||    
T  41302618 attataaatacggtaatagttattttggtatatgaatgtgtaacgagtaatcacaatagtctttcaaagtattaaaattttaaaatagtctatgattttg 41302717  T
Q  265 cacttt 270  Q
    ||||||    
T  41302718 cacttt 41302723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 165 - 327
Target Start/End: Complemental strand, 36754868 - 36754705
Alignment:
Q  165 attataaacaggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttg 264  Q
    |||||||| | | |||||||||||||||||||||||  |||||  | |||||| |||  ||||||| |||||||||||| ||||||| |   || |||||    
T  36754868 attataaaaatggtaatagttattttggtccctgaacatgtaataaataatcataataatctctcagtgtattaaaattctaaaataattcatgattttg 36754769  T
Q  265 cactttattagtcaaaataggtc-tgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
     ||||| ||||||| |||||  | |||||||||||||| |||||||||| || |||||||||||    
T  36754768 tactttgttagtcataatagtccatgaagtgacaataaataagtatattgaaggactaatatga 36754705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 41303050 - 41303117
Alignment:
Q  260 ttttgcactttattagtcaaaataggtctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    ||||||||||| |||||||||||||  ||| ||||||||||| |||||||||||||||||||||||||    
T  41303050 ttttgcactttgttagtcaaaatagccctggagtgacaataattaagtatattaaaagactaatatga 41303117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 312
Target Start/End: Original strand, 33590087 - 33590227
Alignment:
Q  173 caggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttat 272  Q
    |||| ||||||| ||||| ||  |||||| || ||| | |||||||||| ||||||||||||||||||||| |||||||||   || ||||||||||| |    
T  33590087 cagggtaatagtcattttagtatctgaatatgcaacaaataatcacaatagtctctcaatgtattaaaattgtaaaatagttcatgattttgcactttgt 33590186  T
Q  273 tagtcaaaatag-gtctgaagtgacaataagtaagtatatt 312  Q
    ||||||| ||||  | | |||||||||||| ||| ||||||    
T  33590187 tagtcaatatagtcttttaagtgacaataattaattatatt 33590227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 3662313 - 3662391
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||||||| |||||||||||||| | ||||||| |||||| || ||| ||| |||||||||| ||||||||||||||||    
T  3662313 ggataataattattttggtccctaattgtgtaaggagtaaccataatagtccctcaatgtatcaaaattttaaaatagt 3662391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 41303257 - 41303151
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||| ||||||||||||||||| |||||| ||||||  | ||| ||| |||||||||| ||||||||||||||||   || || ||||||||  |||||    
T  41303257 taataattattttggtccctgaaggtgtaaggagtaacaataatagtccctcaatgtatcaaaattttaaaatagtcattgattatgcactttgctagtc 41303158  T
Q  278 aaaatag 284  Q
    |||||||    
T  41303157 aaaatag 41303151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 282
Target Start/End: Complemental strand, 7681116 - 7681012
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||| ||||||||||||||||||||||||  ||||| |  | | ||| |||||||||| |||||||||||||||||| || || |||| ||  ||||||    
T  7681116 taataattattttggtccctgaatgtgtaagaagtaaccctagtagtccctcaatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtc 7681017  T
Q  278 aaaat 282  Q
    |||||    
T  7681016 aaaat 7681012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 440
Target Start/End: Complemental strand, 3662418 - 3662323
Alignment:
Q  345 tttgactagcaaagtgcacaatcaaggtttatttttaaatttttatatattgagagactaatatagttactccatacacaataagggtccaaaata 440  Q
    |||||| ||||| |||||||||||||   |||||| ||||||| ||| |||||| ||||| ||| |||||||| |||||||| |||| ||||||||    
T  3662418 tttgacaagcaatgtgcacaatcaagaactattttaaaattttgatacattgagggactattatggttactccttacacaattagggaccaaaata 3662323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 197 - 312
Target Start/End: Original strand, 1249113 - 1249230
Alignment:
Q  197 tgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaataggtct--gaagtg 294  Q
    ||||| |||||||| |||||| ||| |||||| ||| |||||||||| |||||||||   || |||||| |||| |||||||||||||  ||   |||||    
T  1249113 tgaatatgtaacgaataatcataatagtctcttaatctattaaaattctaaaatagttcatgattttgctctttgttagtcaaaatagtccttgaaagtg 1249212  T
Q  295 acaataagtaagtatatt 312  Q
    ||||||||||| ||||||    
T  1249213 acaataagtaaatatatt 1249230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 342 - 440
Target Start/End: Original strand, 41303152 - 41303250
Alignment:
Q  342 tattttgactagcaaagtgcacaatcaaggtttatttttaaatttttatatattgagagactaatatagttactccatacacaataagggtccaaaata 440  Q
    ||||||||||||||||||||| |||||| |  |||||| ||||||| ||| |||||| ||||| ||| |||||||| |||||  | |||| ||||||||    
T  41303152 tattttgactagcaaagtgcataatcaatgactattttaaaattttgatacattgagggactattattgttactccttacaccttcagggaccaaaata 41303250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 18080183 - 18080287
Alignment:
Q  179 aatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtca 278  Q
    |||||| |||||||||||| |||||||||| | || |||||||||||  |||||||||| ||||| | ||||||| ||| ||| |||| ||  |||||||    
T  18080183 aatagtcattttggtccctaaatgtgtaacaaatagtcacaatggtccttcaatgtattgaaattgt-aaatagtttctagttatgcatttcgttagtca 18080281  T
Q  279 aaatag 284  Q
    ||||||    
T  18080282 aaatag 18080287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 2987250 - 2987171
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctg 258  Q
    ||||||| |||||||| ||| |||||| ||||| || ||||||| || ||||||||||| |||||||||||||||| ||||    
T  2987250 taatagtcattttggttcctaaatgtgaaacgattagtcacaatagt-tctcaatgtatcaaaattttaaaatagtctctg 2987171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 10708363 - 10708430
Alignment:
Q  188 tttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtat 255  Q
    ||||||| || |||||||||| ||||| |||||| |||| ||||||||| |||||| |||||||||||    
T  10708363 tttggtctctaaatgtgtaacaagtaaccacaatagtctttcaatgtatgaaaattctaaaatagtat 10708430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 28802280 - 28802358
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||||||||| ||||| ||| ||||||||||||| | || ||||||| |||  || |||||| ||||||||||||||||    
T  28802280 ggataatagtcattttagtcgctgaatgtgtaacaaatagtcacaatagtccatcgatgtatcaaaattttaaaatagt 28802358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 2987051 - 2987010
Alignment:
Q  293 tgacaataagtaagtatattaaaagactaatatgatggtatt 334  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  2987051 tgacaataagtaagtatattgaaagactaatatgatagtatt 2987010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 42660178 - 42660069
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttatta 274  Q
    |||||||||| | |||| ||| ||||||||| |  |||| ||| ||| |||||| |||||||||| ||||||||||||| | || || |||||| |  ||    
T  42660178 ggataatagtcactttgatccatgaatgtgtcataagtagtcagaatagtctcttaatgtattaagattttaaaatagtctttgattatgcactctcgta 42660079  T
Q  275 gtcaaaatag 284  Q
    ||||||||||    
T  42660078 gtcaaaatag 42660069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 3662543 - 3662508
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagta 213  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3662543 taatagttattttggtccctgaatgtgcaacgagta 3662508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 17488291 - 17488224
Alignment:
Q  186 attttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||||| |||||||||||||||| |||| ||||||| ||| |||||||||   |||||| ||||||||    
T  17488291 attttgctccctgaatgtgtaacaagtagtcacaatagtccctcaatgtagcgaaatttcaaaatagt 17488224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 6393784 - 6393888
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| |||||||||  |||||||||||| ||||   | ||||||| ||||||||||  |||||| ||||||||   || || |||||||||||||||    
T  6393784 taatagtcattttggtca-tgaatgtgtaacaagtagcaataatggtc-ctcaatgtatcgaaatttcaaaatagttcatgattgtgcactttattagtc 6393881  T
Q  278 aaaatag 284  Q
    |||||||    
T  6393882 aaaatag 6393888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 7574369 - 7574446
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||||||||  |||||||||| |||||||||||| |||||||| ||| ||| | ||||||| | |||||| ||||||||    
T  7574369 ggataatagacattttggtccttgaatgtgtaacaagtaatcataatagtcccacaatgta-tcaaatttcaaaatagt 7574446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 21145746 - 21145708
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagta 213  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  21145746 ggataatagtcattttggttcctgaatgtgtaacgagta 21145708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 28929630 - 28929525
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    |||| ||||||||||||| | ||| |||||||||||| |||||| || | | |||||||  |||||| | |||||| |||| || |||||||  ||||||    
T  28929630 taatcgttattttggtccttaaatatgtaacgagtaaccacaatagt-tttaaatgtatcgaaatttcataatagtttctgattatgcacttcgttagtc 28929532  T
Q  278 aaaatag 284  Q
    |||||||    
T  28929531 aaaatag 28929525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 14532505 - 14532452
Alignment:
Q  198 gaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaata 251  Q
    |||||||||| ||||| ||||||| |||||| ||| ||| ||||||||||||||    
T  14532505 gaatgtgtaatgagtagtcacaatagtctcttaatatatcaaaattttaaaata 14532452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 35355299 - 35355331
Alignment:
Q  223 gtctctcaatgtattaaaattttaaaatagtat 255  Q
    ||||||||||||||| |||||||||||||||||    
T  35355299 gtctctcaatgtattgaaattttaaaatagtat 35355331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 42659981 - 42659941
Alignment:
Q  287 ctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    |||| ||||||||||||||||||||| || |||||||||||    
T  42659981 ctgatgtgacaataagtaagtatattgaatgactaatatga 42659941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 165 - 347
Target Start/End: Complemental strand, 41898139 - 41897959
Alignment:
Q  165 attataaacaggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttg 264  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||||||||||||| ||||  ||||||| |||||||| | |  ||| | || |||||    
T  41898139 attataattaggataatagttattttggtccttgaatgtgtaacgagtaatcacaatagtcttacaatgtactaaaatttcaca--agtctttgattttg 41898042  T
Q  265 cactttattagtcaaaataggtctgaagtgacaataagtaagtatattaaaagactaatatgatggtatttataaattatttt 347  Q
    |||||| ||| ||||||||| ||| ||||||||| || ||| |||||||||||||||||||||   |||||| ||||||||||    
T  41898041 cactttgttaatcaaaatagctctaaagtgacaacaaataaatatattaaaagactaatatgacaatatttacaaattatttt 41897959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 226 - 327
Target Start/End: Original strand, 43838486 - 43838588
Alignment:
Q  226 tctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaataggtc-tgaagtgacaataagtaagtatattaaaagactaata 324  Q
    |||||||||||||||||||||||||||| | || ||||| ||||| ||||||| |||||  | ||||||||||||||||||||||||| || | ||||||    
T  43838486 tctcaatgtattaaaattttaaaatagtctttgattttgtactttgttagtcataatagtccatgaagtgacaataagtaagtatattgaagggctaata 43838585  T
Q  325 tga 327  Q
    |||    
T  43838586 tga 43838588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 30843910 - 30843804
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| | |||||| ||||||||||||| ||||| ||||||| |||||| ||||||| ||||||  |||||||| |||| || |||||||| ||| ||    
T  30843910 taatagtcactttggttcctgaatgtgtaatgagtagtcacaatagtctcttaatgtatcaaaattccaaaatagtctctgattgtgcactttgttaatc 30843811  T
Q  278 aaaatag 284  Q
    |||||||    
T  30843810 aaaatag 30843804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 14984404 - 14984512
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttatta 274  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||||| ||| |||||| |||  |||||| |||||| |  ||| || |||||||  |||    
T  14984404 ggataatagtcattttggtcc-tgaatgtgtaacgagtagtcacaatagtccctcaatatatcgaaatttcaaaatactccctgattgtgcacttcgtta 14984502  T
Q  275 gtcaaaatag 284  Q
    ||||||||||    
T  14984503 gtcaaaatag 14984512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 34294214 - 34294105
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttatta 274  Q
    |||||||||| |||||| ||| | ||||||||||||||||  ||||   | ||||| ||||| ||||| |||||||||||| || || |||||||| |||    
T  34294214 ggataatagtcattttgatccttaaatgtgtaacgagtaactacaacaatatctcagtgtatcaaaatcttaaaatagtatatgattgtgcactttgtta 34294115  T
Q  275 gtcaaaatag 284  Q
    ||||||||||    
T  34294114 gtcaaaatag 34294105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 40619299 - 40619190
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttatta 274  Q
    |||||||||||| |||| ||| ||||||||||| ||||| ||| | |  || |||||||||| |||||||||||||||| |||| || |||||| | |||    
T  40619299 ggataatagttactttgatccttgaatgtgtaatgagtagtcatattaatccctcaatgtatcaaaattttaaaatagtctctgattgtgcactatgtta 40619200  T
Q  275 gtcaaaatag 284  Q
     |||||||||    
T  40619199 ttcaaaatag 40619190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 30669357 - 30669422
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaatt 243  Q
    ||||||| |||||| ||||| ||||||||| ||||| ||||||| || ||||||||||||||||||    
T  30669357 taatagtcattttgatccctaaatgtgtaaggagtagtcacaatagtatctcaatgtattaaaatt 30669422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 43837083 - 43837154
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaa 249  Q
    ||||||| ||||| ||| ||||||||||||||| |||||||||| ||| || ||||||  ||||||||||||    
T  43837083 taatagtcattttagtcactgaatgtgtaacgaataatcacaatagtccctaaatgtaccaaaattttaaaa 43837154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 46848476 - 46848401
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||||| | |||||||||||||||||||| ||||| ||| ||| ||  |||||||||| ||||||| ||||||||    
T  46848476 taatagtcactttggtccctgaatgtgtaatgagtagtcaaaatagttcctcaatgtatcaaaatttcaaaatagt 46848401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 327
Target Start/End: Original strand, 50239758 - 50239907
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    |||||||||||||||||| ||||| |||||  | || ||| |||  ||||||| |||||||||||| ||||||| |   || || || ||||| |||||     
T  50239758 taatagttattttggtcc-tgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatccatgtttatgtactttgttagtt 50239856  T
Q  278 aaaataggtc-tgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    | |||||  | |||||||||||||| |||||||||| || |||||||||||    
T  50239857 ataatagtccctgaagtgacaataaataagtatattgaaggactaatatga 50239907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 284
Target Start/End: Complemental strand, 17572087 - 17572002
Alignment:
Q  199 aatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    ||||||||| || |||||||||| ||   |||||||||||||||| ||||||||| | |  || |||| |||||||||||||||||    
T  17572087 aatgtgtaatgattaatcacaatagttcttcaatgtattaaaattctaaaatagtttattattctgcattttattagtcaaaatag 17572002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 51889757 - 51889822
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaatt 243  Q
    ||||||| |||||| || |||||||||||| ||||| ||||||| |||| ||||||||| ||||||    
T  51889757 taatagtcattttgatctctgaatgtgtaaggagtagtcacaatagtctttcaatgtatcaaaatt 51889822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 621964 - 621859
Alignment:
Q  177 ataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagt 276  Q
    |||||||| | ||||||| |||||||||||| ||||| ||| ||| |  ||||||||||| ||||||| ||||||||  ||   | |||||||| |||||    
T  621964 ataatagtcactttggtctctgaatgtgtaatgagtagtcataatag--tctcaatgtatcaaaatttcaaaatagtccctaactgtgcactttgttagt 621867  T
Q  277 caaaatag 284  Q
    ||||||||    
T  621866 caaaatag 621859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 23152064 - 23152112
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtct 226  Q
    |||||||||||||||||| |||||||||||| ||||| |||||| ||||    
T  23152064 taatagttattttggtccatgaatgtgtaactagtaaccacaatagtct 23152112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 12832041 - 12832145
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||||| ||||||| ||||||||  || || |||| ||||| ||| || ||||||| ||| ||||||||||||  || ||| |||||| | ||||||    
T  12832041 taatagttactttggtctctgaatgt--aatgaataattacaatagtcccttaatgtatcaaagttttaaaatagtccctagttgtgcactctcttagtc 12832138  T
Q  278 aaaatag 284  Q
    |||||||    
T  12832139 aaaatag 12832145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 327
Target Start/End: Complemental strand, 37852953 - 37852918
Alignment:
Q  292 gtgacaataagtaagtatattaaaagactaatatga 327  Q
    |||||||||| |||||||||||||||||||||||||    
T  37852953 gtgacaataaataagtatattaaaagactaatatga 37852918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 21568642 - 21568564
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||||||||| | ||| ||||||| |||||||| || || | ||||| ||||| |||||||| |||| |||||||||||    
T  21568642 ggataatagtcactttcgtccctgcatgtgtaatgaatagtgacaatagtctcccaatgtatcaaaaatttaaaatagt 21568564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 26500091 - 26499985
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| |||||| || ||||||||||||  |||| | | ||| || ||| |||||||||||||||||||| ||| | |  || |||||| | ||||||    
T  26500091 taatagtcattttgatctctgaatgtgtaattagtagttaaaatagtttcttaatgtattaaaattttaaaaaagtctataattatgcactcttttagtc 26499992  T
Q  278 aaaatag 284  Q
    |||||||    
T  26499991 aaaatag 26499985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 45681472 - 45681418
Alignment:
Q  199 aatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||| |||| ||||||||||||| |||| | |||||||| |||||||||||||||    
T  45681472 aatgagtaatgagtaatcacaatagtctttaaatgtattgaaattttaaaatagt 45681418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 257808 - 257881
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaata 251  Q
    ||||||||||||| |||  ||||||||||||||||| | |||||  ||| | |||||||| |||||| ||||||    
T  257808 taatagttatttttgtctttgaatgtgtaacgagtagtaacaataatctttgaatgtattgaaatttcaaaata 257881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 5800533 - 5800473
Alignment:
Q  165 attataaa-caggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtc 225  Q
    |||||||| ||||| |||||| ||||| ||||||| ||||||||||| ||||||||||||||    
T  5800533 attataaatcaggacaatagtcattttagtccctggatgtgtaacga-taatcacaatggtc 5800473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 21568298 - 21568407
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttatta 274  Q
    |||||||||| | |||||||  | ||| ||||| ||||| |||||||  ||||||||||||  ||||||| |||||| |  ||| || |||| || ||||    
T  21568298 ggataatagtcactttggtcttttaatatgtaatgagtagtcacaataatctctcaatgtacaaaaatttcaaaataatcgctgattgtgcaattcatta 21568397  T
Q  275 gtcaaaatag 284  Q
    ||||||||||    
T  21568398 gtcaaaatag 21568407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 23195803 - 23195730
Alignment:
Q  203 tgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagt 276  Q
    |||||||||||   ||||| |||| |||||||||||||||||||||||| | |||| || |||| || ||||||    
T  23195803 tgtaacgagtagctacaatagtctttcaatgtattaaaattttaaaataatttctgattgtgcatttcattagt 23195730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 387
Target Start/End: Complemental strand, 40618978 - 40618933
Alignment:
Q  342 tattttgactagcaaagtgcacaatcaaggtttatttttaaatttt 387  Q
    ||||||||||| |||| ||||||||||||| ||||||| |||||||    
T  40618978 tattttgactaacaaattgcacaatcaaggattattttaaaatttt 40618933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 1324509 - 1324565
Alignment:
Q  197 tgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||||||||| |||||||||||||  ||  || |||||| ||||||||||||||||    
T  1324509 tgaatgtgtaatgagtaatcacaataatccttcgatgtatcaaaattttaaaatagt 1324565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 25321775 - 25321719
Alignment:
Q  197 tgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||||||||||||||||  |||||   ||| || |||||||||||||||||||||||    
T  25321775 tgaatgtgtaacgagtaggcacaacaatctatctatgtattaaaattttaaaatagt 25321719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 426
Target Start/End: Original strand, 43838824 - 43838908
Alignment:
Q  342 tattttgactagcaaagtgcacaatcaaggtttatttttaaatttttatatattgagagactaatatagttactccatacacaat 426  Q
    ||||||||||| |||| ||||||||||| |  |||||| ||||||| ||| ||| || ||| | ||||| |||||| ||||||||    
T  43838824 tattttgactaacaaaatgcacaatcaatgactattttaaaattttgatacattaagtgacaattatagctactccttacacaat 43838908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 178 - 325
Target Start/End: Original strand, 27463725 - 27463873
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||| |||||||||||  || ||||||||  |||| ||||| |  |||||||||||||||||||| ||||||||| |||  ||||||||||| ||||||    
T  27463725 taataattattttggtcattggatgtgtaataagtagtcacattattctctcaatgtattaaaattctaaaatagtctctaattttgcactttgttagtc 27463824  T
Q  278 aaaatag-gtctgaagtgacaataagtaagtatattaaaagactaatat 325  Q
    |||||||  | |||| |||||||||||||||||||| ||||||||||||    
T  27463825 aaaatagtctttgaaatgacaataagtaagtatattgaaagactaatat 27463873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 181 - 284
Target Start/End: Complemental strand, 9890801 - 9890698
Alignment:
Q  181 tagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatc-tggttttgcactttattagtcaa 279  Q
    |||| |||||||| |||||||||| ||||| |||||||||| ||||||||||||||||||||| |||||||| ||| || ||||||||||| ||||||||    
T  9890801 tagtcattttggttcctgaatgtggaacgattaatcacaatagtctctcaatgtattaaaattctaaaatag-atcatgattttgcactttgttagtcaa 9890703  T
Q  280 aatag 284  Q
    |||||    
T  9890702 aatag 9890698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 224 - 327
Target Start/End: Complemental strand, 31738430 - 31738327
Alignment:
Q  224 tctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaataggtctgaagtgacaataagtaagtatattaaaagactaat 323  Q
    ||||||||||||||| |||||||||||| | | || ||||| ||||| |||||||||||||  ||||||||||||||| ||||||||||||| || ||||    
T  31738430 tctctcaatgtattagaattttaaaataatttttgattttgtactttgttagtcaaaatagtcctgaagtgacaataaataagtatattaaatgattaat 31738331  T
Q  324 atga 327  Q
    ||||    
T  31738330 atga 31738327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 178 - 327
Target Start/End: Original strand, 49880048 - 49880197
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    |||||||||||||||||||||||| |||||  | || ||| |||  ||||||| ||||||||| || ||||||| |   || ||||| ||||| ||||||    
T  49880048 taatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaa-ttctaaaataatccatgattttgtactttgttagtc 49880146  T
Q  278 aaaataggtc-tgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    | |||||  | ||||||||||||||||||||||||| ||||||||||||||    
T  49880147 ataatagtccctgaagtgacaataagtaagtatattgaaagactaatatga 49880197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 281
Target Start/End: Original strand, 8068897 - 8069058
Alignment:
Q  119 ctatgtggagctaaagccccacatccaacttccttaannnnnnnncattataaacaggataatagttattttggtccctgaatgtgtaacgagtaatcac 218  Q
    |||||||| ||||||||||||||||||||||| |||          |||||||| | | || || |||||||  ||| |||||||||||||| |||||||    
T  8068897 ctatgtggggctaaagccccacatccaacttctttattttttttatattataaataaggtattacttattttaatccatgaatgtgtaacgaataatcac 8068996  T
Q  219 aatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaa 281  Q
    ||| || | |||||||||||||||| |||||||||   || ||||||||||| ||||||||||    
T  8068997 aatagttt-tcaatgtattaaaattctaaaatagttcatgattttgcactttgttagtcaaaa 8069058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 27464013 - 27463907
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| ||| |||||||| ||||||||| |||||| || | | |||||||||||||| ||||||| |||||||| ||||||| |||||||  |||| |    
T  27464013 taatagtcattgtggtccctaaatgtgtaaggagtaaccatactagtctctcaatgtatcaaaatttcaaaatagtctctggttgtgcacttcgttagac 27463914  T
Q  278 aaaatag 284  Q
    |||||||    
T  27463913 aaaatag 27463907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 45679514 - 45679608
Alignment:
Q  188 tttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaat 282  Q
    ||||||| |||||||||||||||||| |||||||  ||  |||| ||||||||||||||||||||| | || || |||||| |||||||||||||    
T  45679514 tttggtctctgaatgtgtaacgagtagtcacaataatccatcaacgtattaaaattttaaaatagtttttgattgtgcactctattagtcaaaat 45679608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 187 - 327
Target Start/End: Complemental strand, 40872821 - 40872683
Alignment:
Q  187 ttttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaataggt 286  Q
    |||||||||||||| ||||||  | || ||| ||| |||| |||||||||||||||||||| |||||  ||| ||||| ||||| ||||||   ||||      
T  40872821 ttttggtccctgaacgtgtaataaatagtcataatagtctttcaatgtattaaaattttaatatagtccctgattttgtactttgttagtc---atagtc 40872725  T
Q  287 c-tgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    | |||||||||||||||||||||||||| | | |||||||||    
T  40872724 cttgaagtgacaataagtaagtatattatagggctaatatga 40872683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 52361952 - 52362005
Alignment:
Q  230 aatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaata 283  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  52361952 aatgtattaaaattttaaaatagtctctgattttgcactttattattcaaaata 52362005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 16658353 - 16658221
Alignment:
Q  186 attttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatagg 285  Q
    |||||||||| ||| |||||||  | || | | ||| |||||| |||||||||||||| |||||||||   || ||||| ||||| ||||||| |||||     
T  16658353 attttggtccgtgagtgtgtaataaatatttataatagtctcttaatgtattaaaattctaaaatagtccgtgattttgtactttgttagtcataatagt 16658254  T
Q  286 tc-tgaagtgacaataagtaagtatattaaaag 317  Q
    || |||||||| ||||||||||||||| |||||    
T  16658253 tcatgaagtgataataagtaagtatatcaaaag 16658221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 50804266 - 50804341
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||||||||||| |||| ||||||||||||||||  ||||||| |||| | ||||| | ||||||||||||||||    
T  50804266 taatagttattttagtccttgaatgtgtaacgagtggtcacaatagtctttgaatgtgtcaaaattttaaaatagt 50804341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 36144780 - 36144850
Alignment:
Q  173 caggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaatt 243  Q
    |||||||||||| |||||||||| ||||| ||||| |||||||||||||  |||| |||||||| ||||||    
T  36144780 caggataatagtcattttggtccttgaatatgtaatgagtaatcacaatactctcccaatgtatcaaaatt 36144850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 2998897 - 2998954
Alignment:
Q  196 ctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||||||||||| |||||||||||| |||| | ||||||| ||||||||||||||||    
T  2998897 ctgaatgtgtaacaagtaatcacaatagtctgtaaatgtatcaaaattttaaaatagt 2998954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 39162406 - 39162481
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||||| |||||||||| |||||| |||| ||||||||||||| ||   |||||||||| |||||| ||||||||    
T  39162406 taatagtcattttggtccttgaatgcgtaatgagtaatcacaatagtacttcaatgtattgaaatttcaaaatagt 39162481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 10018720 - 10018778
Alignment:
Q  195 cctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||||| |||||| |||| ||||||| |||| ||||||||| ||||||||||||||||    
T  10018720 cctgaatatgtaaccagtagtcacaatagtctatcaatgtatcaaaattttaaaatagt 10018778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 32670089 - 32670043
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaat 221  Q
    |||||||||| |||||| ||||||||||||||||||||| |||||||    
T  32670089 ggataatagtcattttgatccctgaatgtgtaacgagtattcacaat 32670043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 27900620 - 27900725
Alignment:
Q  179 aatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtca 278  Q
    |||||| | |||||||| ||||| | ||| || || | ||||| |||||| ||||||| ||||||||||||||||  ||| || |||||| || ||||||    
T  27900620 aatagtcactttggtccttgaatatataaagaatagttacaatagtctcttaatgtatcaaaattttaaaatagtccctgattgtgcactctaatagtca 27900719  T
Q  279 aaatag 284  Q
    ||||||    
T  27900720 aaatag 27900725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 31134830 - 31134765
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaatt 243  Q
    ||||||| |||||||||||||||||||||||||||| |||| || ||| |  ||||||| ||||||    
T  31134830 taatagtcattttggtccctgaatgtgtaacgagtagtcacgatagtcccaaaatgtataaaaatt 31134765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 33747270 - 33747375
Alignment:
Q  179 aatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtca 278  Q
    |||| ||||||||| || |||||||||||| |||| ||||||| ||   |||||||||  |||||| |||| ||||| || || |||||||  |||||||    
T  33747270 aataattattttggaccttgaatgtgtaacaagtagtcacaatagttcttcaatgtatcgaaatttcaaaacagtatttgattctgcacttcgttagtca 33747369  T
Q  279 aaatag 284  Q
    ||||||    
T  33747370 aaatag 33747375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 32669785 - 32669833
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtct 226  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||| ||||    
T  32669785 taatagtcattttggtccatgaatgtgtaacgagtagtcacaatagtct 32669833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 283
Target Start/End: Complemental strand, 10519606 - 10519519
Alignment:
Q  196 ctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaata 283  Q
    ||||||||||||||||||| || |||  ||| | |||||| |||||||  ||||||||||||| || | || ||||||| ||||||||    
T  10519606 ctgaatgtgtaacgagtaaccataataatcttttaatgtagtaaaattacaaaatagtatctgattgtacaatttattaatcaaaata 10519519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 327
Target Start/End: Complemental strand, 7151981 - 7151951
Alignment:
Q  297 aataagtaagtatattaaaagactaatatga 327  Q
    |||||||||||||||||||||||||||||||    
T  7151981 aataagtaagtatattaaaagactaatatga 7151951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 280
Target Start/End: Original strand, 14926308 - 14926386
Alignment:
Q  202 gtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaa 280  Q
    |||||| |||||  |||||| |||||| ||||||| ||||||||||||||||  ||| || |||||| | |||||||||    
T  14926308 gtgtaaggagtaggcacaatagtctctgaatgtatgaaaattttaaaatagttactgattgtgcactatgttagtcaaa 14926386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 35621666 - 35621592
Alignment:
Q  179 aatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||||| |||||| ||| | ||||||||||||||  ||||||| || | | ||||||||||| ||||||||||||    
T  35621666 aatagtcattttgatccttaaatgtgtaacgagttgtcacaatagtttttaaatgtattaaatttttaaaatagt 35621592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 38901483 - 38901585
Alignment:
Q  181 tagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaa 280  Q
    |||| |||||| ||| | || |||||||||||| ||||||| ||| |||| |||||| |||||  ||||||||   || || ||| ||||||||||||||    
T  38901483 tagtcattttgatccttaaacgtgtaacgagtagtcacaatagtccctcattgtattgaaattacaaaatagttcatgattgtgcgctttattagtcaaa 38901582  T
Q  281 ata 283  Q
    |||    
T  38901583 ata 38901585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 1315595 - 1315668
Alignment:
Q  180 atagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||| ||||| |||| |||| ||||||| |||| | |||   ||||||||||||||||||||| |||||||||    
T  1315595 atagtcattttcgtccatgaacgtgtaacaagtagttacacgagtctctcaatgtattaaaattctaaaatagt 1315668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 6541272 - 6541350
Alignment:
Q  342 tattttgactagcaaagtgcacaatcaaggtttatttttaaatttttatatattgagagactaatatagttactccataca 422  Q
    ||||||||||  ||||||||||||||| || ||||||| |||||||   ||||| | |||||| |||||||||||| ||||    
T  6541272 tattttgacttacaaagtgcacaatcatggattattttaaaatttt--gatattaaaagactagtatagttactccttaca 6541350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 6728100 - 6728027
Alignment:
Q  180 atagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||| ||||| ||||||||||||||||||| || ||||||| |||  |||||| || ||||||  ||||||||    
T  6728100 atagtcattttcgtccctgaatgtgtaacgaatagtcacaatagtccttcaatgaatcaaaattccaaaatagt 6728027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 284
Target Start/End: Original strand, 33746801 - 33746906
Alignment:
Q  179 aatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtca 278  Q
    |||| ||||||||| || ||||||||||||||||| |||||||  ||  ||||||||   ||||| |||||||||   || || | ||||| ||||||||    
T  33746801 aataattattttggcccttgaatgtgtaacgagtagtcacaataatcattcaatgtagataaattgtaaaatagtcattgattgtacacttaattagtca 33746900  T
Q  279 aaatag 284  Q
    ||||||    
T  33746901 aaatag 33746906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 31738500 - 31738464
Alignment:
Q  97 caggggcggatacatttagaggctatgtggagctaaa 133  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  31738500 caggggcggatacattaagaggctatgtggggctaaa 31738464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 556
Target Start/End: Complemental strand, 49880197 - 49880157
Alignment:
Q  516 tcatagtagtcttttaatatatttacttattgtcacttcag 556  Q
    ||||| |||||||| |||||| |||||||||||||||||||    
T  49880197 tcatattagtctttcaatatacttacttattgtcacttcag 49880157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 51849654 - 51849554
Alignment:
Q  184 ttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaata 283  Q
    |||||||| ||||||||  || |||||||  | | ||| ||| || |||||||||||||||||||||||| | || || | |||||  ||||||||||||    
T  51849654 ttattttgatccctgaacatgcaacgagtggttaaaatagtccctgaatgtattaaaattttaaaatagtttgtgattgtacacttctttagtcaaaata 51849555  T
Q  284 g 284  Q
    |    
T  51849554 g 51849554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 176 - 327
Target Start/End: Original strand, 25084901 - 25085053
Alignment:
Q  176 gataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattag 275  Q
    |||||||||||||||||||| || |||| ||||||||| | | ||| |||||| |||||||||||||||| ||||||| | |  ||||||| |||||||     
T  25084901 gataatagttattttggtccttggatgtataacgagtagttataatagtctcttaatgtattaaaatttttaaatagtctttaattttgcattttattaa 25085000  T
Q  276 tcaaaat-aggtctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    ||||||| |  | |||||||| |||||||||||||||| ||||| ||||||||    
T  25085001 tcaaaataatctttgaagtgaaaataagtaagtatattgaaagaataatatga 25085053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 181 - 328
Target Start/End: Original strand, 26293372 - 26293520
Alignment:
Q  181 tagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaa 280  Q
    ||||||||||||||||| |||||||||| ||||| ||||||  ||| | ||| |||||||||| |||||||||   || ||||| ||||| |||||||||    
T  26293372 tagttattttggtccctaaatgtgtaacaagtaaccacaataatcttttaatatattaaaattctaaaatagtccatgattttgtactttgttagtcaaa 26293471  T
Q  281 atag-gtctgaagtgacaataagtaagtatattaaaagactaatatgat 328  Q
    ||||  | | ||||||||||||||| ||||||| || ||||||||||||    
T  26293472 atagcatttaaagtgacaataagtatgtatattgaatgactaatatgat 26293520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 327
Target Start/End: Original strand, 21237172 - 21237307
Alignment:
Q  193 tccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag-gtctgaa 291  Q
    |||||||||||||||  |||| ||| ||| ||||||||||||||||||||| |||||||||  |||  |||| ||||||||||||| |||||   ||| |    
T  21237172 tccctgaatgtgtaataagtagtcataatagtctctcaatgtattaaaattctaaaatagtccctgagtttgtactttattagtcataatagtccctgga 21237271  T
Q  292 gtgacaataagtaagtatattaaaagactaatatga 327  Q
    |||||||||| |||||||||| || | |||||||||    
T  21237272 gtgacaataactaagtatattgaacggctaatatga 21237307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 25085193 - 25085085
Alignment:
Q  176 gataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattag 275  Q
    ||||||| ||||||||||||| |||||||||| ||||||||| ||| ||  || ||||||| |||||||||||||| | | || || |||||||| ||||    
T  25085193 gataataattattttggtcccagaatgtgtaaggagtaatcataatagtaccttaatgtatcaaaattttaaaatactttttgattgtgcactttgttag 25085094  T
Q  276 tcaaaatag 284  Q
    |||||||||    
T  25085093 tcaaaatag 25085085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 10219537 - 10219643
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| ||||||||||||||||||||||||||||  |||||| ||| || ||||| |  |||||| ||||||||  ||| || |||||||| ||||||    
T  10219537 taatagtcattttggtccctgaatgtgtaacgagtagccacaatagtcccttaatgtgtcgaaatttcaaaatagttcctgattgtgcactttgttagtc 10219636  T
Q  278 aaaatag 284  Q
    |||||||    
T  10219637 aaaatag 10219643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 19264827 - 19264722
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| ||||  |||| ||||||||||||||||| ||||||| |||||| |||||||  ||||||||||||||| |||| || |||||| | ||||||    
T  19264827 taatagtcatttacgtccttgaatgtgtaacgagtagtcacaatagtctct-aatgtatcgaaattttaaaatagtctctgattatgcactatgttagtc 19264729  T
Q  278 aaaatag 284  Q
    |||||||    
T  19264728 aaaatag 19264722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 10067827 - 10067721
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| ||||| |||  |||||||||||| ||||| |||||| ||||||||||||||  ||||||||||||||| |||| || || | ||| ||| ||    
T  10067827 taatagtcattttagtctttgaatgtgtaacaagtaaccacaatagtctctcaatgtatcgaaattttaaaatagtctctgattgtgtattttgttaatc 10067728  T
Q  278 aaaatag 284  Q
    |||||||    
T  10067727 aaaatag 10067721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 6524852 - 6524936
Alignment:
Q  186 attttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcacttt 270  Q
    |||||||||| |||||||||||  |||| ||| ||| ||||||||||||||||||||| |||||||||  ||| ||||| |||||    
T  6524852 attttggtccatgaatgtgtaataagtagtcataatagtctctcaatgtattaaaattctaaaatagtccctgattttgtacttt 6524936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 326
Target Start/End: Original strand, 17848691 - 17848795
Alignment:
Q  223 gtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag-gtctgaagtgacaataagtaagtatattaaaagacta 321  Q
    |||||| ||||||||||||||||||| |||| | |  ||||||| ||||||||| |||||||   | || |||||||||||||||||||| ||| |||||    
T  17848691 gtctctaaatgtattaaaattttaaattagtttttaattttgcattttattagtgaaaatagtcccagatgtgacaataagtaagtatatcaaatgacta 17848790  T
Q  322 atatg 326  Q
    |||||    
T  17848791 atatg 17848795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 21020851 - 21020926
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||||| |||||||||||||||| | ||||||||||| | ||| |||| || |||||| ||||||||||||||||    
T  21020851 taatagtcattttggtccctgaatatataacgagtaattataatagtctttcgatgtatcaaaattttaaaatagt 21020926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 21021199 - 21021093
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    |||||||||||||| || |||||||||||| ||||  ||||||| || | | || |||| ||||||||||||||||   || || |||| ||||||||||    
T  21021199 taatagttattttgatctctgaatgtgtaatgagtggtcacaatcgttttttaaagtatcaaaattttaaaatagttattgattatgcattttattagtc 21021100  T
Q  278 aaaatag 284  Q
    |||||||    
T  21021099 aaaatag 21021093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 9307566 - 9307494
Alignment:
Q  181 tagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||| ||||| |||||||||||||||||||||| | | ||||||  | ||||||||| |||||||||||||||    
T  9307566 tagtcattttagtccctgaatgtgtaacgagtagttataatggtaccccaatgtattgaaattttaaaatagt 9307494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 516098 - 516056
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaa 220  Q
    ||||||| |||||||||||||||||||||||||||| ||||||    
T  516098 taatagtcattttggtccctgaatgtgtaacgagtagtcacaa 516056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 9436849 - 9436771
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||| ||||| ||||| ||| ||||||  |||||||||| ||||||| ||||||||||| ||  |||||||||||||||    
T  9436849 ggatgatagtcattttagtctctgaataggtaacgagtagtcacaatagtctctcaatggatcgaaattttaaaatagt 9436771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 33807019 - 33806910
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttatta 274  Q
    |||||||||| ||| |||| ||||||||| ||| ||||| || |||| |||||||||||||| ||||||  ||||| || | || || |||  || ||||    
T  33807019 ggataatagtcattgtggttcctgaatgtataaagagtactcgcaatagtctctcaatgtatcaaaattcaaaaattgtctatgattatgcgtttcatta 33806920  T
Q  275 gtcaaaatag 284  Q
    ||||||||||    
T  33806919 gtcaaaatag 33806910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 4964344 - 4964288
Alignment:
Q  228 tcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    ||||||||||||||||||||||||||   |  || ||||||||||||||||||||||    
T  4964344 tcaatgtattaaaattttaaaatagtcaataattatgcactttattagtcaaaatag 4964288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 22260371 - 22260438
Alignment:
Q  185 tattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||||| ||||| ||||||||| |||||| |  ||||||| |||||||||| ||||||||||||||||    
T  22260371 tattttgatccctaaatgtgtaaggagtaaccgtaatggtc-ctcaatgtatcaaaattttaaaatagt 22260438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 33806650 - 33806756
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||||||||| |||| ||||||||||| ||||| |||||||  ||  | |||||||  ||||| |||||||||   || || || ||||| ||||||    
T  33806650 taatagttattttagtccatgaatgtgtaaggagtagtcacaataatcctttaatgtatcgaaattctaaaatagtcattgattatgtactttgttagtc 33806749  T
Q  278 aaaatag 284  Q
    |||||||    
T  33806750 aaaatag 33806756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 17848582 - 17848615
Alignment:
Q  116 aggctatgtggagctaaagccccacatccaactt 149  Q
    ||||||||||| ||||||||||||||||||||||    
T  17848582 aggctatgtggggctaaagccccacatccaactt 17848615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 27223681 - 27223754
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaata 251  Q
    ||||||||||||| |||  ||||||||||||||||| | |||||  ||| | |||||||| |||||| ||||||    
T  27223681 taatagttatttttgtctttgaatgtgtaacgagtagtaacaataatctttgaatgtattgaaatttcaaaata 27223754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 28748085 - 28748036
Alignment:
Q  234 tattaaaattttaaaatagtatctggttttgcactttattagtcaaaata 283  Q
    ||||||||||||||||||||||||| || || | ||| ||||||||||||    
T  28748085 tattaaaattttaaaatagtatctgattatgaattttgttagtcaaaata 28748036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 9762667 - 9762615
Alignment:
Q  230 aatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaat 282  Q
    ||||||| |||||||||||||||| | || || |||||| |||||||||||||    
T  9762667 aatgtatcaaaattttaaaatagtttttgattgtgcactatattagtcaaaat 9762615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 398
Target Start/End: Complemental strand, 22260468 - 22260412
Alignment:
Q  342 tattttgactagcaaagtgcacaatcaaggtttatttttaaatttttatatattgag 398  Q
    |||||| ||||||||||||||||||||| |  |||||| ||||||| ||| ||||||    
T  22260468 tattttaactagcaaagtgcacaatcaatgactattttaaaattttgatacattgag 22260412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 24084624 - 24084684
Alignment:
Q  224 tctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    ||||||||||||| |||||||||||||||||| |   | | |||||| |||||||||||||    
T  24084624 tctctcaatgtatcaaaattttaaaatagtatttaaatatacactttgttagtcaaaatag 24084684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 178 - 327
Target Start/End: Original strand, 11534784 - 11534934
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||||||||||   ||||||||||||||||||| | | ||| | |||||||||||||||| | || ||||| | |||  |||||||| || ||||||    
T  11534784 taatagttattttgactcctgaatgtgtaacgagtatttataatagcctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtc 11534883  T
Q  278 aaaatag-gtctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
     |||||  | |||||||||||||||||||||||||||||||| ||||||||    
T  11534884 gaaataccgcctgaagtgacaataagtaagtatattaaaagattaatatga 11534934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 324
Target Start/End: Original strand, 11505200 - 11505347
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||||||||||   ||||||||||||||||||| | | ||| | |||||||||||||||| | || ||||| | |||  |||||||| || ||||||    
T  11505200 taatagttattttgactcctgaatgtgtaacgagtatttataatagcctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtc 11505299  T
Q  278 aaaata-ggtctgaagtgacaataagtaagtatattaaaagactaata 324  Q
     |||||    |||||||||||||||||||||||||||||||| |||||    
T  11505300 gaaataccccctgaagtgacaataagtaagtatattaaaagattaata 11505347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 324
Target Start/End: Original strand, 11512594 - 11512741
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||||||||||   ||||||||||||||||||| | | ||| | |||||||||||||||| | || ||||| | |||  |||||||| || ||||||    
T  11512594 taatagttattttgactcctgaatgtgtaacgagtatttataatagcctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtc 11512693  T
Q  278 aaaata-ggtctgaagtgacaataagtaagtatattaaaagactaata 324  Q
     |||||    |||||||||||||||||||||||||||||||| |||||    
T  11512694 gaaataccccctgaagtgacaataagtaagtatattaaaagattaata 11512741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 324
Target Start/End: Original strand, 11519970 - 11520117
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||||||||||   ||||||||||||||||||| | | ||| | |||||||||||||||| | || ||||| | |||  |||||||| || ||||||    
T  11519970 taatagttattttgactcctgaatgtgtaacgagtatttataatagcctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtc 11520069  T
Q  278 aaaata-ggtctgaagtgacaataagtaagtatattaaaagactaata 324  Q
     |||||    |||||||||||||||||||||||||||||||| |||||    
T  11520070 gaaataccccctgaagtgacaataagtaagtatattaaaagattaata 11520117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 324
Target Start/End: Original strand, 11527378 - 11527525
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||||||||||   ||||||||||||||||||| | | ||| | |||||||||||||||| | || ||||| | |||  |||||||| || ||||||    
T  11527378 taatagttattttgactcctgaatgtgtaacgagtatttataatagcctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtc 11527477  T
Q  278 aaaata-ggtctgaagtgacaataagtaagtatattaaaagactaata 324  Q
     |||||    |||||||||||||||||||||||||||||||| |||||    
T  11527478 gaaataccccctgaagtgacaataagtaagtatattaaaagattaata 11527525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 180 - 327
Target Start/End: Original strand, 11497846 - 11497994
Alignment:
Q  180 atagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaa 279  Q
    ||||||||||||   ||||||||||||||||||| | | ||| | |||||||||||||||| | || ||||| | |||  |||||||| || |||||| |    
T  11497846 atagttattttgactcctgaatgtgtaacgagtatttataatagcctctcaatgtattaaattctttaaataatctctaattttgcacattgttagtcga 11497945  T
Q  280 aataggtc-tgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    || |   | ||||||||||||||||||||||||||||||| ||||||||    
T  11497946 aacaccccctgaagtgacaataagtaagtatattaaaagattaatatga 11497994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 16127050 - 16127125
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||||| |||||||||||| ||||||||| ||||| ||||||| ||||||||| |||| ||||||| ||||||||    
T  16127050 taatagtcattttggtccctaaatgtgtaaggagtagtcacaatagtctctcaaagtatcaaaatttcaaaatagt 16127125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 42420634 - 42420559
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||||||||||||||| ||||||||||||||  || ||||||| |||| | ||||||| ||||||||||||||||    
T  42420634 taatagttattttggtctctgaatgtgtaacgtatagtcacaattgtctttaaatgtatcaaaattttaaaatagt 42420559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 6217752 - 6217643
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttatta 274  Q
    |||||||||| |||||||||| |||||||||| ||| ||  |||||| ||| |||||||||| ||||||| ||||||||   || || |||||||  |||    
T  6217752 ggataatagtcattttggtccatgaatgtgtagcgaatagccacaatagtccctcaatgtatcaaaatttcaaaatagtccatgattatgcacttcgtta 6217653  T
Q  275 gtcaaaatag 284  Q
    ||||||||||    
T  6217652 gtcaaaatag 6217643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 165 - 312
Target Start/End: Complemental strand, 27770071 - 27769923
Alignment:
Q  165 attataaacaggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttg 264  Q
    |||||||| ||  |||||||  ||||| ||||| |||||||||  | || ||| ||| |||| |||||||||||||||| |||||||||   || |||||    
T  27770071 attataaaaagactaatagtccttttgatccctaaatgtgtaataaatagtcataatagtctttcaatgtattaaaattctaaaatagtccatgattttg 27769972  T
Q  265 cactttattagtcaaaatag-gtctgaagtgacaataagtaagtatatt 312  Q
     ||||| ||||||| |||||  | |||||||| ||||||||||||||||    
T  27769971 tacttttttagtcataatagtctttgaagtgaaaataagtaagtatatt 27769923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 28903906 - 28903774
Alignment:
Q  186 attttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatagg 285  Q
    |||||||||| ||| |||||||  | || | | ||| |||||| |||||||||||||| |||||||||   || ||||| ||||| ||||||| |||||     
T  28903906 attttggtccgtgagtgtgtaataaatatttataatagtctcttaatgtattaaaattctaaaatagtccgtgattttgtactttgttagtcataatagt 28903807  T
Q  286 tc-tgaagtgacaataagtaagtatattaaaag 317  Q
    || |||||||| ||||||||||||||| |||||    
T  28903806 tcatgaagtgataataagtaagtatatcaaaag 28903774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 28940301 - 28940169
Alignment:
Q  186 attttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatagg 285  Q
    |||||||||| ||| |||||||  | || | | ||| |||||| |||||||||||||| |||||||||   || ||||| ||||| ||||||| |||||     
T  28940301 attttggtccgtgagtgtgtaataaatatttataatagtctcttaatgtattaaaattctaaaatagtccgtgattttgtactttgttagtcataatagt 28940202  T
Q  286 tc-tgaagtgacaataagtaagtatattaaaag 317  Q
    || |||||||| ||||||||||||||| |||||    
T  28940201 tcatgaagtgataataagtaagtatatcaaaag 28940169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 917264 - 917158
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| |||||||| |||||||||||||  | || ||||||| ||| ||||||||||  ||||||||||||||| | || || | |||||||||  ||    
T  917264 taatagtcattttggttcctgaatgtgtaaatattagtcacaatcgtccctcaatgtatcgaaattttaaaatagtctttgattgtacactttatttatc 917165  T
Q  278 aaaatag 284  Q
    |||||||    
T  917164 aaaatag 917158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 11498132 - 11498026
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||| ||||||||||||||||||||||||  ||||| |  | | ||| |||||||||| |||||||||||||||||| || || | ||||||  |||||    
T  11498132 taataattattttggtccctgaatgtgtaagaagtaaccctagtagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtc 11498033  T
Q  278 aaaatag 284  Q
    || ||||    
T  11498032 aacatag 11498026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 27001482 - 27001388
Alignment:
Q  188 tttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaat 282  Q
    |||||| | ||||||||||| ||||| ||||||| ||||||| || ||| |||||||||||||||| |||| || |||||| | ||| |||||||    
T  27001482 tttggttcttgaatgtgtaatgagtagtcacaatagtctctcgatatatcaaaattttaaaatagtctctgattgtgcactctgttactcaaaat 27001388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 29686423 - 29686499
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaata 251  Q
    |||||||||| | |||||||| ||||||| ||| ||||| |||||||  || |||||||||||||||||| ||||||    
T  29686423 ggataatagtcactttggtccatgaatgtataatgagtagtcacaataatccctcaatgtattaaaatttcaaaata 29686499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 19342600 - 19342521
Alignment:
Q  200 atgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaa 279  Q
    ||||||||||||||| ||||||  ||| ||||| |||||||||||||||||||| | || || |||| | ||||||||||    
T  19342600 atgtgtaacgagtaaccacaataatctatcaatatattaaaattttaaaatagtttttgattgtgcattatattagtcaa 19342521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 31949355 - 31949280
Alignment:
Q  209 gagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    ||||||||||||| |||||| ||| |||||||||||||| | ||| |||| || |||||| | |||||||||||||    
T  31949355 gagtaatcacaatagtctcttaatatattaaaattttaagagagtctctgattgtgcactatgttagtcaaaatag 31949280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 37853305 - 37853246
Alignment:
Q  342 tattttgactagcaaagtgcacaatcaaggtttatttttaaatttttatatattgagaga 401  Q
    ||||||||||| |||||||||||||||| | ||||||| ||||||| || ||||||||||    
T  37853305 tattttgactaacaaagtgcacaatcaaagattattttaaaattttaatgtattgagaga 37853246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 11505488 - 11505382
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||| |||||||| |||||||||||||||  ||||| |  | | ||| |||||||||| |||||||||||||||||| || || | ||||||  |||||    
T  11505488 taataattattttgatccctgaatgtgtaagaagtaaccctagtagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtc 11505389  T
Q  278 aaaatag 284  Q
    || ||||    
T  11505388 aacatag 11505382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 11512882 - 11512776
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||| |||||||| |||||||||||||||  ||||| |  | | ||| |||||||||| |||||||||||||||||| || || | ||||||  |||||    
T  11512882 taataattattttgatccctgaatgtgtaagaagtaaccctagtagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtc 11512783  T
Q  278 aaaatag 284  Q
    || ||||    
T  11512782 aacatag 11512776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 11520258 - 11520152
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||| |||||||| |||||||||||||||  ||||| |  | | ||| |||||||||| |||||||||||||||||| || || | ||||||  |||||    
T  11520258 taataattattttgatccctgaatgtgtaagaagtaaccctagtagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtc 11520159  T
Q  278 aaaatag 284  Q
    || ||||    
T  11520158 aacatag 11520152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 11527666 - 11527560
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||| |||||||| |||||||||||||||  ||||| |  | | ||| |||||||||| |||||||||||||||||| || || | ||||||  |||||    
T  11527666 taataattattttgatccctgaatgtgtaagaagtaaccctagtagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtc 11527567  T
Q  278 aaaatag 284  Q
    || ||||    
T  11527566 aacatag 11527560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 11535072 - 11534966
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||| |||||||||||||| |||||||||  ||||| |  | | ||| |||||||||| |||||||||||||||||| || || | ||||||  |||||    
T  11535072 taataattattttggtccctaaatgtgtaagaagtaaccctagtagtccctcaatgtatcaaaattttaaaatagtatttgattattcacttttctagtc 11534973  T
Q  278 aaaatag 284  Q
    || ||||    
T  11534972 aacatag 11534966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 2707855 - 2707818
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaat 215  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  2707855 taatagtcattttggtccctgaatgtgtaacgagtaat 2707818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 327
Target Start/End: Original strand, 9023236 - 9023386
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    |||||||||||||||||||||||| ||||   | || ||| |||  |||| || ||||||| | || ||||||| |   || ||||| ||||| |||||     
T  9023236 taatagttattttggtccctgaatatgtattaaatagtcataataatctcacagtgtattacacttctaaaataatccatgattttgtactttgttagtt 9023335  T
Q  278 aaaataggtc-tgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    | |||||  | |||||||||||||| |||||||||| || |||||||||||    
T  9023336 ataatagtccctgaagtgacaataaataagtatattgaaggactaatatga 9023386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 14461878 - 14461772
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| |||||| ||||| ||| ||||||||||   ||||||  ||| ||| | |||| ||||||||||||||| |||| || | |||||  ||||||    
T  14461878 taatagtcattttgatccctaaatatgtaacgagtggccacaataatctttcagtctattcaaattttaaaatagtctctgattgtacacttcgttagtc 14461779  T
Q  278 aaaatag 284  Q
    |||||||    
T  14461778 aaaatag 14461772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 23159029 - 23159135
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| | ||| |||||||||||||||| || || | | ||| |||  ||||||||| |||||||||||||||||| || || |||| ||  |||||     
T  23159029 taatagtcactttagtccctgaatgtgtaatgattagttataatagtccatcaatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagta 23159128  T
Q  278 aaaatag 284  Q
    |||||||    
T  23159129 aaaatag 23159135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 32270741 - 32270679
Alignment:
Q  189 ttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaata 251  Q
    ||||||||||||| ||||||||||||||| |||  | |||||||||||  |||||| ||||||    
T  32270741 ttggtccctgaatatgtaacgagtaatcataataatttctcaatgtatcgaaatttcaaaata 32270679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 37181053 - 37181123
Alignment:
Q  179 aatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaa 249  Q
    ||||||||||||||| |||| ||| ||| | |||| ||| ||| |||||| ||| ||||||||||||||||    
T  37181053 aatagttattttggtgcctggatgcgtagcaagtagtcataatagtctcttaatatattaaaattttaaaa 37181123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 7756776 - 7756703
Alignment:
Q  180 atagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||| |||||||||||| |||||| ||||| ||| |||||| ||  || |||||||| |||||| ||||||||    
T  7756776 atagtcattttggtccctaaatgtgcaacgaataaccacaatagttcctgaatgtattgaaatttcaaaatagt 7756703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 9023478 - 9023418
Alignment:
Q  223 gtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    |||| |||||||||||||||||| |||| || |||| || | ||||||||||||||||||||    
T  9023478 gtctatcaatgtattaaaatttt-aaattgtctctgattgtacactttattagtcaaaatag 9023418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 556
Target Start/End: Complemental strand, 11497994 - 11497954
Alignment:
Q  516 tcatagtagtcttttaatatatttacttattgtcacttcag 556  Q
    ||||| || |||||||||||| |||||||||||||||||||    
T  11497994 tcatattaatcttttaatatacttacttattgtcacttcag 11497954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 556
Target Start/End: Complemental strand, 11534934 - 11534894
Alignment:
Q  516 tcatagtagtcttttaatatatttacttattgtcacttcag 556  Q
    ||||| || |||||||||||| |||||||||||||||||||    
T  11534934 tcatattaatcttttaatatacttacttattgtcacttcag 11534894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 16127157 - 16127093
Alignment:
Q  340 attattttgactagcaaagtgcacaatcaaggtttatttttaaatttttatatattgagagacta 404  Q
    ||||||||||||| |||| | |||||||||||  |||||| ||||||| |||  |||||||||||    
T  16127157 attattttgactaacaaactacacaatcaaggactattttgaaattttgatactttgagagacta 16127093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 22391800 - 22391736
Alignment:
Q  340 attattttgactagcaaagtgcacaatcaaggtttatttttaaatttttatatattgagagacta 404  Q
    |||| ||||| || |||| ||||||||||||| | ||||| ||||||| ||||||||| ||||||    
T  22391800 attaatttgagtaacaaaatgcacaatcaaggatcattttaaaattttgatatattgaaagacta 22391736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 32518169 - 32518129
Alignment:
Q  179 aatagttattttggtccctgaatgtgtaacgagtaatcaca 219  Q
    |||||||||||||||||||  |||||||||||||| |||||    
T  32518169 aatagttattttggtcccttcatgtgtaacgagtagtcaca 32518129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 37853246 - 37853306
Alignment:
Q  224 tctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    |||||||||  ||||||||||||||||| | | || || |||||||| |||||||||||||    
T  37853246 tctctcaatacattaaaattttaaaataatctttgattgtgcactttgttagtcaaaatag 37853306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 38416057 - 38416120
Alignment:
Q  197 tgaatgtgtaacgagtaatcacaatggtc--tctcaatgtattaaaattttaaaatagtatctg 258  Q
    ||||||||||||| || |||||||| ||   || |||||||| |||||||||||||||||||||    
T  38416057 tgaatgtgtaacgggtgatcacaatagtacttcacaatgtatcaaaattttaaaatagtatctg 38416120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 165 - 327
Target Start/End: Original strand, 34896 - 35059
Alignment:
Q  165 attataaacaggataatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttg 264  Q
    |||||||| | | |||||||||||||||||||||||| |||||  | || ||| |||  ||||||| |||||||||||| ||||||| |   || |||||    
T  34896 attataaaaatggtaatagttattttggtccctgaatatgtaataaatagtcataataatctctcagtgtattaaaattctaaaataatccatgattttg 34995  T
Q  265 cactttattagtcaaaatag-gtctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
     ||||| ||||||| |||||   ||||||||| ||||| |||||||||| || |||||||||||    
T  34996 tactttgttagtcataatagtccctgaagtgataataaataagtatattgaaggactaatatga 35059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 35146 - 35091
Alignment:
Q  228 tcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaatag 284  Q
    |||||||||||||||||| |||| || ||||||| | ||||| ||||||||||||||    
T  35146 tcaatgtattaaaatttt-aaattgtctctggttgtacacttcattagtcaaaatag 35091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 327
Target Start/End: Complemental strand, 2652 - 2505
Alignment:
Q  181 tagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaa 280  Q
    |||||||||||||| |||||| |||||  | || ||| |||  ||||||| |||||||||||| ||||||| |   || ||||| ||||| ||||||| |    
T  2652 tagttattttggtctctgaatatgtaataaatattcataataatctctcagtgtattaaaattctaaaataatccatgattttgtactttgttagtcata 2553  T
Q  281 at-aggtctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    || |   ||||||||||||||| |||||||||| || |||||||||||    
T  2552 ataatccctgaagtgacaataaataagtatattgaaggactaatatga 2505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 327
Target Start/End: Complemental strand, 17373 - 17227
Alignment:
Q  180 atagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaa 279  Q
    ||||| ||||||||||||||||||| ||| |||| |  |||| || |||||||||||||||||| ||||||||   ||| ||||| ||   |||||||||    
T  17373 atagtcattttggtccctgaatgtgcaacaagtagtagcaatagtttctcaatgtattaaaattctaaaataggccctgattttgtac--cattagtcaa 17276  T
Q  280 aataggt--ctgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    ||| |||  ||| ||||||||||| |||||||||| ||| |||| |||||    
T  17275 aat-ggtccctgtagtgacaataaataagtatattgaaatactagtatga 17227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 327
Target Start/End: Complemental strand, 20266 - 20122
Alignment:
Q  184 ttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtcaaaata 283  Q
    ||||||| |||||||||| |||||  | || ||| |||  | ||||| |||||||||||| ||||||| |   || ||||| ||||| ||||||| ||||    
T  20266 ttatttttgtccctgaatatgtaataaatagtcataatattatctcagtgtattaaaattctaaaataatccatgattttgtactttgttagtcataata 20167  T
Q  284 ggtc-tgaagtgacaataagtaagtatattaaaagactaatatga 327  Q
    |  | |||||||||||||| |||||||||| || |||||||||||    
T  20166 gtccctgaagtgacaataaataagtatattgaaggactaatatga 20122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 20910 - 20837
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaata 251  Q
    ||||||||| ||||||||||||||||||| | |||| ||| ||| |||  ||||| ||| ||||||||||||||    
T  20910 taatagttaatttggtccctgaatgtgtagcaagtagtcaaaatagtccttcaatatatcaaaattttaaaata 20837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 6196 - 6271
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    ||||||| |||| |||| || |||||| |||||||| || |||| |||  ||||||||| ||||||||||||||||    
T  6196 taatagtcatttcggtctctcaatgtgcaacgagtagtcccaatagtccatcaatgtatcaaaattttaaaatagt 6271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 81672 - 81593
Alignment:
Q  175 ggataatagttattttggtccctgaatgtgtaacg-agtaatcacaatggtctctcaatgtattaaaattttaaaatagt 253  Q
    |||||||||| |||||||||  ||||||||||||| | ||| || ||| ||| || |||||||| |||||||||||||||    
T  81672 ggataatagtcattttggtctttgaatgtgtaacgaattaaccataatagtccctgaatgtattgaaattttaaaatagt 81593  T

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Target: scaffold0050; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 81295 - 81401
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaaatagtatctggttttgcactttattagtc 277  Q
    ||||||| |||||| ||| |||||||| || |||||  |||||| || ||| | |||||| |||||| |||||||| | || || |||||||  ||||||    
T  81295 taatagtcattttgatccttgaatgtgcaatgagtagccacaatagtatctgattgtattgaaatttcaaaatagtttatgattgtgcacttcgttagtc 81394  T
Q  278 aaaatag 284  Q
    |||||||    
T  81395 aaaatag 81401  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 80265 - 80335
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaa 248  Q
    |||||| ||||||||||||| |||||||||| | || | | ||| |||||| |||||||||||||| ||||    
T  80265 taatagctattttggtccctaaatgtgtaacaaatagttataatagtctctaaatgtattaaaattctaaa 80335  T

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Target: scaffold0008; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 80758 - 80828
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaa 248  Q
    |||||| ||||||||||||| |||||||||| | || | | ||| |||||| |||||||||||||| ||||    
T  80758 taatagctattttggtccctaaatgtgtaacaaatagttataatagtctctaaatgtattaaaattctaaa 80828  T

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Target: scaffold0008; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 81251 - 81321
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaa 248  Q
    |||||| ||||||||||||| |||||||||| | || | | ||| |||||| |||||||||||||| ||||    
T  81251 taatagctattttggtccctaaatgtgtaacaaatagttataatagtctctaaatgtattaaaattctaaa 81321  T

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Target: scaffold0008; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 81744 - 81814
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaa 248  Q
    |||||| ||||||||||||| |||||||||| | || | | ||| |||||| |||||||||||||| ||||    
T  81744 taatagctattttggtccctaaatgtgtaacaaatagttataatagtctctaaatgtattaaaattctaaa 81814  T

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Target: scaffold0008; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 82237 - 82307
Alignment:
Q  178 taatagttattttggtccctgaatgtgtaacgagtaatcacaatggtctctcaatgtattaaaattttaaa 248  Q
    |||||| ||||||||||||| |||||||||| | || | | ||| |||||| |||||||||||||| ||||    
T  82237 taatagctattttggtccctaaatgtgtaacaaatagttataatagtctctaaatgtattaaaattctaaa 82307  T

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