View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15363_low_6 (Length: 495)
Name: NF15363_low_6
Description: NF15363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15363_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 54457033 - 54456716
Alignment:
| Q |
1 |
aagttacgaaactgaccaatagaataactttgtccttgccactggtctgtggaaaatgtttgatttcaggtggttgtgaagcatcaacagcaacagggtt |
100 |
Q |
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| T |
54457033 |
aagttacgaaactgaccaatagaataactttgtccttgtcactggtctgtggaaaatgtttgatttcaggtggttgtgaagcatcaacagcaacagggtt |
54456934 |
T |
|
| Q |
101 |
catcatcatcatcggtgtagaatttgaccacacagaattgagaggcttctgcatagttccaaacgccccctccattgcaagctccctcctcacttcatcc |
200 |
Q |
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| T |
54456933 |
catcatcatcatcggtgtagaatttgaccacacagaattgagaggcttctgcatagttccaaacgccccctccattgcaagctccctcctcacttcatcc |
54456834 |
T |
|
| Q |
201 |
tccaactctatccgccgcaacatatcccgcctgatttgttccttctccatctctcgtcgtaatgccgcctcgttggtggccaatggtgctcggaagccag |
300 |
Q |
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| T |
54456833 |
tccaactctatccgccgcaacatatcccgccggatttgttccttctccatctctcgtcgtaatgccgcctcgttggtggccaatggtgctcggaagccag |
54456734 |
T |
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| Q |
301 |
caaaaccaccgtccactg |
318 |
Q |
| |
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|||||||||||||||||| |
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| T |
54456733 |
caaaaccaccgtccactg |
54456716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 112 - 317
Target Start/End: Complemental strand, 54056601 - 54056396
Alignment:
| Q |
112 |
tcggtgtagaatttgaccacacagaattgagaggcttctgcatagttccaaacgccccctccattgcaagctccctcctcacttcatcctccaactctat |
211 |
Q |
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| T |
54056601 |
tcggtgtagaatttgaccatagagaattgagaggcctctgcatggttccaaacgccccctccattgcaagctccctcctcacttcctcctccaactccat |
54056502 |
T |
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| Q |
212 |
ccgccgcaacatatcccgcctgatttgttccttctccatctctcgtcgtaatgccgcctcgttggtggccaatggtgctcggaagccagcaaaaccaccg |
311 |
Q |
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| T |
54056501 |
ccgcctcaacatatcccgccggatttgttccttctcgatctctcgtcgtaatgccgcctcattggtggccaacggtacccgggagccagaaaaaccaccg |
54056402 |
T |
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| Q |
312 |
tccact |
317 |
Q |
| |
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|||||| |
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| T |
54056401 |
tccact |
54056396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 399 - 482
Target Start/End: Complemental strand, 54056330 - 54056247
Alignment:
| Q |
399 |
ggattttcagattgaattacttggaagagatcgatcagggatatatgtgacggtgggaagagaaggctgcatggttgatggatt |
482 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54056330 |
ggattttcctattgaattacttggaagagatcgatcagggagatatgtgacggtgggaagagaaggctgcatggttgatggatt |
54056247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 399 - 482
Target Start/End: Complemental strand, 54456645 - 54456562
Alignment:
| Q |
399 |
ggattttcagattgaattacttggaagagatcgatcagggatatatgtgacggtgggaagagaaggctgcatggttgatggatt |
482 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
54456645 |
ggattttcagattgaattacttggaagagatcggtcagggagatatgtgacggtgggatgagaaggctgcatggttgatggatt |
54456562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 54056639 - 54056600
Alignment:
| Q |
8 |
gaaactgaccaatagaataactttgtccttgccactggtc |
47 |
Q |
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||||||||||||||||||||||||||||||| ||| |||| |
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| T |
54056639 |
gaaactgaccaatagaataactttgtccttgtcacaggtc |
54056600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 15039895 - 15039967
Alignment:
| Q |
148 |
tctgcatagttccaaacgccccctccattgcaagctccctcctcacttcatcctccaactctatccgccgcaa |
220 |
Q |
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||||||| |||||||||| || |||||||||||||||||||| ||| || |||||||| ||| || ||||||| |
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| T |
15039895 |
tctgcatggttccaaacgtcctctccattgcaagctccctccacacctcctcctccaattctttctgccgcaa |
15039967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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