View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15364_high_3 (Length: 519)
Name: NF15364_high_3
Description: NF15364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15364_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 10 - 505
Target Start/End: Complemental strand, 36868459 - 36867964
Alignment:
| Q |
10 |
catcaacaagatgattaatggtgacattttggtgtgttcctgactttgacaacaatgttatagaccaaccctagcttgaaggttcttggataatcttaac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36868459 |
catcaacaagatgattaatggtgacattttggtgtgttcctgactttgacaacaatgttataaaccaaccctagcttgaaggttcttggataatcttaac |
36868360 |
T |
|
| Q |
110 |
ataagcatgcgctttaacgtctttgcctctatgatacaattgctaatgttataatgaaaatccaacacnnnnnnncctggtcaaatgttgtaaatgggtg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36868359 |
ataagcatgcgctttaacgtctttgcctctatgatacaattgctaatgttataatgaaaatccaacacaaaaaaacctggtcaaatgttgtaaatgggtg |
36868260 |
T |
|
| Q |
210 |
aaaatcctaatcaattattttattttatctttcttaatgcttcaaagagtgtgcttgtacaaatatcatttctcatgttttattgtagacataaactctt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36868259 |
aaaatcctaatcaattattttattttatctttcttaaggcttcaaagagtgtgcttgtacaaatatcatttctcatgttttattgtagtcataaactctt |
36868160 |
T |
|
| Q |
310 |
tcataggtgtatgatttttaagaatcgtatacttattatatctacaacaataaaagcatgtttatttataccctttaaatcaataagataacatatatat |
409 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36868159 |
tcataggtgtatgatttttaagaatcatatacttattatatctacaacaataaaagcatgtttatttataccctttaaatcaataagataacatgtatat |
36868060 |
T |
|
| Q |
410 |
gttatagggaaacatttaaatcatattatatctacagacattttattccttgactatttacgcaaagatgcacctcgtagttgtagtacatgaaac |
505 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36868059 |
gttatagggaaacatttaaataatattatatctacagacattttattccttgactatttactcaaagatgcacctcgtagttgtagtacatgaaac |
36867964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 36861921 - 36861749
Alignment:
| Q |
12 |
tcaacaagatgattaatggtgacattttggtgtgttcctgact---ttgacaacaatgttatagaccaacc-ctagcttgaaggttcttggataatctta |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
36861921 |
tcaacaagatgattgatggtgacattttggtgtgttcctgactctcttgataacaaaattatagaccaaccactagcttgaaggttcttgtataatctta |
36861822 |
T |
|
| Q |
108 |
acataagcatgcgctttaacgtctttgcctctatgatacaattgctaa---tgttataatgaaaatccaacac |
177 |
Q |
| |
|
||||||| || ||| ||| ||||||| || |||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
36861821 |
acataagtatttgctataaattctttgcgtcgatgatacaattgctaatgttgttataaagaaaatccaacac |
36861749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 35024156 - 35024391
Alignment:
| Q |
10 |
catcaacaagatgattaatggtgacattttggtgtgttcctgacttt-gacaacaatg-ttatagaccaaccc--tagcttgaaggttcttggataatct |
105 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||| | || || || ||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
35024156 |
catcaacaagttgattgatggtgacattttggtgtgttcctgactctcgataaaaaaaattatagaccaaaccactagcttgaaggttcttgtataatct |
35024255 |
T |
|
| Q |
106 |
taacataagcatgcgctttaacgtctttgcctctatgatacaattgctaa---tgttataatgaaaatccaacacnnnnnnncctggtcaaatgttgtaa |
202 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
35024256 |
taatataagcatgcgctttaaattctttgcctctatgatacatttgctaatgttgttataatgaaaatccaacac-aaaaaaccttgtcaaatgtagtaa |
35024354 |
T |
|
| Q |
203 |
atgggtgaaaatcctaatcaattattttattttatct |
239 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
35024355 |
atgggtgaaaatcctaaccaattgttttattttatct |
35024391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 10 - 177
Target Start/End: Original strand, 35027784 - 35027958
Alignment:
| Q |
10 |
catcaacaagatgattaatggtgacattttggtgtgttcctgact---ttgacaacaatgttatagaccaacc-ctagcttgaaggttcttggataatct |
105 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||||| ||| ||| |
|
|
| T |
35027784 |
catcaacaagatgattgatggtgacattttggtgtgttcctgactctcttgataacaaaattatagaccaaccactagcttgaaggttcttgtatattct |
35027883 |
T |
|
| Q |
106 |
taacataagcatgcgctttaacgtctttgcctctatgatacaattgctaa---tgttataatgaaaatccaacac |
177 |
Q |
| |
|
||||||||||| |||||||| |||||| || |||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
35027884 |
taacataagcactcgctttaaatactttgcgtcgatgatacaattgctaatgctgtttcaatgaaaatccaacac |
35027958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 391 - 505
Target Start/End: Original strand, 35024693 - 35024809
Alignment:
| Q |
391 |
aataagataacatatatatgttatagggaaacatttaaatcatattatatctacagacattttattccttgac---tatttacgcaaagatgcacctcgt |
487 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| | || ||||||| |||||||||||||||| |
|
|
| T |
35024693 |
aataagatagcatatatatgttatagggaaacatt-aaatcatattatatctacacacatttttttccattacgtatatttactcaaagatgcacctcgt |
35024791 |
T |
|
| Q |
488 |
agttgtagtacatgaaac |
505 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35024792 |
ggttgtagtacatgaaac |
35024809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 35024636 - 35024693
Alignment:
| Q |
287 |
ttttattgtagacataaactctttcataggtgtatgatttttaagaatcgtatactta |
344 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||| || ||||| |
|
|
| T |
35024636 |
ttttattgtagacataaattctttcataggtgtatgatttttaagtatcataaactta |
35024693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 31385663 - 31385810
Alignment:
| Q |
14 |
aacaagatgattaatggtgacattttggtgtgttcctgact---ttgacaacaatgttatagaccaaccct-agcttgaaggttcttggataatcttaac |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| | || | |||| |||| | ||| |||||||||| || | || |||||||||| || |||||||||| |
|
|
| T |
31385663 |
aacaagatgattaatggtgacattttggtttatttcagactctcttgatagcaaaattatagaccatccatcagtttgaaggttcatgtataatcttaaa |
31385762 |
T |
|
| Q |
110 |
ataagcatgcgctttaacgtctttgcctctatgatacaattgctaatg |
157 |
Q |
| |
|
| || |||| |||||| ||||||||||| | ||||| ||||||||| |
|
|
| T |
31385763 |
acaaacatgagctttacattctttgcctctttcatacagttgctaatg |
31385810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University