View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15364_low_10 (Length: 235)
Name: NF15364_low_10
Description: NF15364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15364_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 20141084 - 20141302
Alignment:
| Q |
1 |
ttgccaaccaactaatacagtcatgcagattcacaaaattgatccagtaatcatgatccacaggagaatcttgaatagttctccaaatattatcgcccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20141084 |
ttgccaaccaactaatacagtcatgcagattcacaaaattgatccagtaatcatgatccacaggagaatcttgaatagttctccaaatattatcgcccaa |
20141183 |
T |
|
| Q |
101 |
actgaagacatatacatttgtttcacctggaacgaaatacaccaccttgtaagtgtcagttgaattgacataagcaaatgtcaaattaggatggaaccac |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20141184 |
actgaagacatatacatttgtttcacctggaactaaatacaacaccttgtaagtgtcagttgaattgacataagcaaatgtcaaattaggatggaaccac |
20141283 |
T |
|
| Q |
201 |
atgtctttatgaagacaat |
219 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
20141284 |
atgtctttatgaagacaat |
20141302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 20133583 - 20133797
Alignment:
| Q |
1 |
ttgccaaccaactaatacagtcatgcagattcacaaaattgatccagtaatcatgatccacaggagaatcttgaatagttctccaaatattatcgcccaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| || |
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| T |
20133583 |
ttgccaaccaactaatacagtcactcagattcacaacatttatccaacaatcatgattcacgggagaatcttgaatagttctccaaatattatcgccaaa |
20133682 |
T |
|
| Q |
101 |
actgaagacatatacatttgtttcacctggaacgaaatacaccaccttgtaagtgtcagttgaattgacataagcaaatgtcaaattaggatggaaccac |
200 |
Q |
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|||||| ||| |||||||||| | |||||| |||||||| |||||||||||||| |||||||| ||||| |||| |||||||||||| |||||| |
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| T |
20133683 |
actgaaaacacttacatttgttgtatttggaactaaatacacgaccttgtaagtgtcggttgaattaacatagccaaacttcaaattaggatagaaccat |
20133782 |
T |
|
| Q |
201 |
atgtctttatgaaga |
215 |
Q |
| |
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| ||||||||||||| |
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|
| T |
20133783 |
aggtctttatgaaga |
20133797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 20351879 - 20351704
Alignment:
| Q |
21 |
tcatgcagattcacaaaattgatccagtaatcatgatccacaggagaatcttgaatagttctccaaatattatcgcccaaactgaagacatatacatttg |
120 |
Q |
| |
|
||||| || ||||||| ||| ||| | ||| |||||||||| ||||||| ||||||| ||||||||| ||||||||||||||| || |||| ||||| |
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| T |
20351879 |
tcatgtaggttcacaacattcatcgaataaccatgatccacgggagaattttgaatatttctccaaacattatcgcccaaacttaaaacatgcacattat |
20351780 |
T |
|
| Q |
121 |
tttcacctggaacgaaatacaccaccttgtaagtgtcagttgaattgacataagcaaatgtcaaattaggatggaa |
196 |
Q |
| |
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|| | |||||| |||||| ||||||| |||||||| |||||||| || ||| |||| ||||||||| ||||||| |
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|
| T |
20351779 |
ttgtatttggaactaaatacgccaccttataagtgtcggttgaattaacgtaaccaaacgtcaaattatgatggaa |
20351704 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 196
Target Start/End: Original strand, 20361472 - 20361664
Alignment:
| Q |
4 |
ccaaccaactaatacagtcatgcagattcacaaaattgatccagtaatcatgatccacaggagaatcttgaatagttctccaaatattatcgcccaaact |
103 |
Q |
| |
|
||||||||||||||| ||| || ||||||| ||| ||| | ||| |||||||||| ||||||| ||||||| |||||||||||||||| ||| ||| |
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|
| T |
20361472 |
ccaaccaactaatactctcacttaggttcacaacattcatcgaataaccatgatccacgggagaattttgaatatttctccaaatattatctcccttact |
20361571 |
T |
|
| Q |
104 |
gaagacatatacatttgtttcacctggaacgaaatacaccaccttgtaagtgtcagttgaattgacataagcaaatgtcaaattaggatggaa |
196 |
Q |
| |
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||| ||| |||||| || | |||||| |||||| ||||||| |||| ||| ||||||| |||||| |||| ||||||||| ||||||| |
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|
| T |
20361572 |
gaaaacacgtacattatttgtatttggaactaaatacgccaccttataagcgtcgattgaattaacataaccaaacgtcaaattatgatggaa |
20361664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 20338728 - 20338636
Alignment:
| Q |
1 |
ttgccaaccaactaatacagtcatgcagattcacaaaattgatccagtaatcatgatccacaggagaatcttgaatagttctccaaatattat |
93 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||| ||| || ||||||||||| ||||||||||| ||||||| |||||||| |||||| |
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|
| T |
20338728 |
ttgccaaccaactaatacagccactcagatgcacagcattcatggagtaatcatgagtcacaggagaattttgaatatttctccaactattat |
20338636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 12820321 - 12820362
Alignment:
| Q |
140 |
caccaccttgtaagtgtcagttgaattgacataagcaaatgt |
181 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
12820321 |
caccaccttgtaagtgtcagttgaattatcataaccaaatgt |
12820362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 20360830 - 20360770
Alignment:
| Q |
135 |
aaatacaccaccttgtaagtgtcagttgaattgacataagcaaatgtcaaattaggatgga |
195 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||| || |||| ||||||||| |||||| |
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|
| T |
20360830 |
aaatacaccaccttataagtgttggttgaattaacaaaaccaaacgtcaaattatgatgga |
20360770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 22088326 - 22088226
Alignment:
| Q |
66 |
gaatcttgaatagttctccaaatattatcgcccaaactgaagacatatacatttgtttcacctggaacgaaatacaccaccttgtaagtgtcagttgaat |
165 |
Q |
| |
|
|||||||| ||| ||||||||| |||| |||||||||| || || |||||||||| ||||| ||||||||||||||| ||||| || ||||||| |
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|
| T |
22088326 |
gaatcttggatatttctccaaacattaacgcccaaactaaaaactcttacatttgttgtctctggagtgaaatacaccaccttataagtttctgttgaat |
22088227 |
T |
|
| Q |
166 |
t |
166 |
Q |
| |
|
| |
|
|
| T |
22088226 |
t |
22088226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 15960964 - 15960841
Alignment:
| Q |
66 |
gaatcttgaatagttctccaaatattatcgcccaaactgaagacatatacatttgtttcacctggaacgaaatacaccaccttgtaagtgtcagttgaat |
165 |
Q |
| |
|
||||||||||| ||||||||| ||| || | |||||| || || ||| |||||| ||| ||| |||||||||| ||||| || ||||||||||||| |
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|
| T |
15960964 |
gaatcttgaatgtttctccaaacattctctctcaaactaaaaactcttacctttgttccactaggatcgaaatacacaaccttatatgtgtcagttgaat |
15960865 |
T |
|
| Q |
166 |
tgacataagcaaatgtcaaattag |
189 |
Q |
| |
|
|| ||||| ||||||||||||||| |
|
|
| T |
15960864 |
tgtcataaccaaatgtcaaattag |
15960841 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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