View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15364_low_2 (Length: 744)
Name: NF15364_low_2
Description: NF15364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15364_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 21 - 719
Target Start/End: Original strand, 7387203 - 7387904
Alignment:
| Q |
21 |
aatgcctcttaactatagcgtgaggacctatggcctccacatctccagtcacccctacaacaatcagttggacaaacacaatggtagggccaaagctcac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7387203 |
aatgcctcttaactatagcgtgaggacctatggcctccacatctccggtcacccctacaacaatcagttggacaaacacaatggtagggccaaagctcgc |
7387302 |
T |
|
| Q |
121 |
tcctctcactcgtctcttattccattactatctataagccatactcaacaatctttacattgacgaatatcaaacccttatgaagattttttgcgcgaca |
220 |
Q |
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|| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7387303 |
tcttctcacttgtctcttattccattactatctatgagccatattcaacaatctttacattgacgaatatcaaacccttatgaaatttttttgcgcgaca |
7387402 |
T |
|
| Q |
221 |
tttacaatatgacaaccgaaagacacaacttctt---gaacttgtcattggtgattgacttggtcaaacatatcaattgcattctctaatatacatatct |
317 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7387403 |
tttacaatatgacaaccgaaagacacaacttcttcttgaacttatcattggtgattgacttggtcaaacatatcaatggcattctctaatatacatatct |
7387502 |
T |
|
| Q |
318 |
tttcacatgcaaataactttgannnnnnngaaacttcacattaatgtattaggtctcacctaattatttattaaataaatgacactcttactatcacaat |
417 |
Q |
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|||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |
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| T |
7387503 |
tttcacatgcaaataactctgatttttttgaaacttcacatgaatgtattaggtctcacctgattatttattaaataaatgacactcgtactacgacaat |
7387602 |
T |
|
| Q |
418 |
gtaattgaactccaacttgctcaacacccaatcccctctctaatcatgtaaaatgtaagatctctttgacaaccttaattactactatgtactactcttc |
517 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||||||| |
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| T |
7387603 |
gtaattgaactccaacttgctcaacacccagttccctctctaatcatgtaaactgtaagacctctttgacaaccttaactactgctatgtactactcttc |
7387702 |
T |
|
| Q |
518 |
aatttcagacattgccactatgaattgatcaaatgattttcaacaaatagatcctttagcatatcacaagcatagtctgaatcaatatatcatacaacag |
617 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7387703 |
aatttcagacattgccactatgaattgaccaaatgattttcaacaaatagatcctttagcatatcacaagcatagtctgaatcaatatatcctacaacag |
7387802 |
T |
|
| Q |
618 |
aaggatcattttgtccacttaaatatgatacaatgactgttgtcagaggcagatccaatttgtggccatgtgtagctaaaaccacatatccattccctaa |
717 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7387803 |
aaggatcattttgtccacttaaatatgatacaatgactgttgtcagaggcagatccaatttgtggccatgtgtggctaaaaccacatatccattccctaa |
7387902 |
T |
|
| Q |
718 |
ag |
719 |
Q |
| |
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|| |
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|
| T |
7387903 |
ag |
7387904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 9726352 - 9726405
Alignment:
| Q |
252 |
cttgaacttgtcattggtgattgacttggtcaaacatatcaattgcattctctaa |
306 |
Q |
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||||||||||||| || ||| |||||||||| ||||||||| ||||||||||||| |
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|
| T |
9726352 |
cttgaacttgtcactgatgactgacttggtc-aacatatcagttgcattctctaa |
9726405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 32492063 - 32492106
Alignment:
| Q |
252 |
cttgaacttgtcattggtgattgacttggtcaaacatatcaattg |
296 |
Q |
| |
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||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
32492063 |
cttgaacttgtcatttgtgattgacttggtc-aacatatcaattg |
32492106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 449
Target Start/End: Complemental strand, 32985493 - 32985434
Alignment:
| Q |
390 |
aaataaatgacactcttactatcacaatgtaattgaactccaacttgctcaacacccaat |
449 |
Q |
| |
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|||||||||||||||| |||||||||||| || |||||| ||||||||||||||||| |
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| T |
32985493 |
aaataaatgacactctgactatcacaatgcaaccagactccaccttgctcaacacccaat |
32985434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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