View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15364_low_3 (Length: 604)
Name: NF15364_low_3
Description: NF15364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15364_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 129 - 566
Target Start/End: Complemental strand, 21484600 - 21484166
Alignment:
| Q |
129 |
acaccattgaaaaccattgcatgtacttcaactacaacaactactacctcttcttcttcctcagcttcttcttcatctgcagcttcttgggctgttttga |
228 |
Q |
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| T |
21484600 |
acaccattgaaaaccattgcatgtacttcaactacaacaactactacctcttcttcttcctcagcttcttcttcatctgcagcttcttgggctgttttga |
21484501 |
T |
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| Q |
229 |
aatcagatgttgaagtagatcatcaaggttatcatcaaaaacatggtcatccattagattatcatcatggtcatcctccaacaactttgtcatcaactgc |
328 |
Q |
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| T |
21484500 |
aatcagatgttgaagtagatcatcaaggttatca---aaaacatggtcatccattagattatcatcatggtcatcctccaacaactttgtcatcaactgc |
21484404 |
T |
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| Q |
329 |
ttctatggagatttctcagcaacagcaacaagatcttggtgtttctaacaatgatgttgttgttggtggtggtgattgcatggatgatgttaacattatg |
428 |
Q |
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| T |
21484403 |
ttctatggagatttctcaacaacagcaacaagatcttggtgtttctaacaatgatgttgttgttggtggtggtgattgcatggatgatgttaacattatg |
21484304 |
T |
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| Q |
429 |
gatacttttggttacatggagcttttagaagctaatgaattttttgaccctgcttcgatttttcaaaatgaagatgaaaaccctttagtggatttcacac |
528 |
Q |
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| T |
21484303 |
gatacttttggttacatggagcttttagaagctaatgaattttttgaccctgcttcgatttttcaaaatgaagatgaaaaccctttagtggatttcactc |
21484204 |
T |
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| Q |
529 |
aagagcaacaagttcaagtgcaagacggatatcaacaa |
566 |
Q |
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| T |
21484203 |
aagagcaacaagttcaagtgcaagacggatatcaacaa |
21484166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 21484728 - 21484631
Alignment:
| Q |
1 |
caaatgatcaagatggtgatcttttaggtatgaatatgaatgatgatgcatctatgttctatgctgattttccacctttacctgattttccatgcatg |
98 |
Q |
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| T |
21484728 |
caaatgatcaagatggtgatcttttaggtatgaatatgaatgatgatgcatctatgttctatgctgattttcctcctttacctgattttccatgcatg |
21484631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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