View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15364_low_9 (Length: 236)
Name: NF15364_low_9
Description: NF15364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15364_low_9 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 12858850 - 12859066
Alignment:
| Q |
1 |
tctgctacgatgaggagtcgaggattgtggctgaatcgcgataagaggattgttggcgcgattcctgggatttgtattggtgacgtgtttttgtatagga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
12858850 |
tctgctacgatgaggagtcgaggattgtggctgaatcgcgataagaggattgttggcgcgattcctgggatttgtatcggtgatgtgtttttgtatagga |
12858949 |
T |
|
| Q |
101 |
tggagttgtgtgtggttggtttacatggtcaaccacaagctgggattgattatttgccggggagtatgagttcgaatggggaaccgattgctactagtgt |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12858950 |
tggagttgtgtgttgttggtttacatggtcaaccacaagctgggattgattatttgccggggagtatgagttcgaatggtgaaccgattgctactagtgt |
12859049 |
T |
|
| Q |
201 |
gattgtttctggtgggt |
217 |
Q |
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||||||||||||||||| |
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| T |
12859050 |
gattgtttctggtgggt |
12859066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 12846698 - 12846914
Alignment:
| Q |
1 |
tctgctacgatgaggagtcgaggattgtggctgaatcgcgataagaggattgttggcgcgattcctgggatttgtattggtgacgtgtttttgtatagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
12846698 |
tctgctacgatgaggagtcgaggattgtggctgaattgcgataagaggattgttggcgcgattcccgggatttgtattggtgatgtgtttttgtatagga |
12846797 |
T |
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| Q |
101 |
tggagttgtgtgtggttggtttacatggtcaaccacaagctgggattgattatttgccggggagtatgagttcgaatggggaaccgattgctactagtgt |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||||||||| | ||| || ||||||||||||||||| |
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| T |
12846798 |
tggagttgtgtgtggttggtttacatggtgaaccacaagctgggatcgattattttcctgggagtatgagttcaattggcgatccgattgctactagtgt |
12846897 |
T |
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| Q |
201 |
gattgtttctggtgggt |
217 |
Q |
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||||||||||||||||| |
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| T |
12846898 |
gattgtttctggtgggt |
12846914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 15475181 - 15475285
Alignment:
| Q |
107 |
tgtgtgtggttggtttacatggtcaaccacaagctgggattgattatttgccggggagtatgagttcgaatggggaaccgattgctactagtgtgattgt |
206 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||| | | ||||||||||| ||||| |||| ||||||||||||||| |||| |
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| T |
15475181 |
tgtgtgtgattggcttacatggtcaaccacaagctgggattgattatttacatgctagtatgagttctaatggccaacccattgctactagtgtggttgt |
15475280 |
T |
|
| Q |
207 |
ttctg |
211 |
Q |
| |
|
|||| |
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|
| T |
15475281 |
gtctg |
15475285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 15168571 - 15168467
Alignment:
| Q |
107 |
tgtgtgtggttggtttacatggtcaaccacaagctgggattgattatttgccggggagtatgagttcgaatggggaaccgattgctactagtgtgattgt |
206 |
Q |
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|||||||| |||| ||| ||||||||||||||||||||||||||||||| | | ||||||||||| ||||| || | ||||||||||||||| |||| |
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| T |
15168571 |
tgtgtgtgattggcttaaatggtcaaccacaagctgggattgattatttacatgctagtatgagttctaatggccaagccattgctactagtgtggttgt |
15168472 |
T |
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| Q |
207 |
ttctg |
211 |
Q |
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|||| |
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| T |
15168471 |
gtctg |
15168467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 15181653 - 15181605
Alignment:
| Q |
107 |
tgtgtgtggttggtttacatggtcaaccacaagctgggattgattattt |
155 |
Q |
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|||||||| |||| ||| ||||||||||||||||||||||||||||||| |
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| T |
15181653 |
tgtgtgtgattggcttaaatggtcaaccacaagctgggattgattattt |
15181605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 23252904 - 23253008
Alignment:
| Q |
107 |
tgtgtgtggttggtttacatggtcaaccacaagctgggattgattatttgccggggagtatgagttcgaatggggaaccgattgctactagtgtgattgt |
206 |
Q |
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|||||||| |||| ||||| ||||||||||||||||||||||||||||| | | ||||||||||| ||||| |||| ||||||||||||||| |||| |
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| T |
23252904 |
tgtgtgtgattggattacacggtcaaccacaagctgggattgattatttacatgctagtatgagttctaatggccaacccattgctactagtgtggttgt |
23253003 |
T |
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| Q |
207 |
ttctg |
211 |
Q |
| |
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|||| |
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| T |
23253004 |
gtctg |
23253008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 29751064 - 29750874
Alignment:
| Q |
25 |
ttgtggctgaatcgcgataagaggattgttggcgcgattcctgggatttgtattggtgacgtgtttttgtataggatggagttgtgtgtggttggtttac |
124 |
Q |
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||||||||| |||||||||||||||| ||||| |||| ||||| ||| | ||||||| |||||||||| ||||||||| |||||||| ||||||| | |
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| T |
29751064 |
ttgtggctgtatcgcgataagaggatagttggaccgatacctggagtttatgttggtgatgtgtttttgtttaggatggaattgtgtgtaattggtttgc |
29750965 |
T |
|
| Q |
125 |
atggtcaaccacaagctgggattgattatttgccggggagtatgagttcgaatggggaaccgattgctactagtgtgattgtttctggtgg |
215 |
Q |
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|| || ||||||||| |||||||| |||| |||| | | || ||||| ||||| |||||||| |||||||||||||| ||||| |
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| T |
29750964 |
atatgcagatacaagctggcattgattacctgcctaaaagtaggtgctcaaatggtgaaccaattgctaccagtgtgattgtttcgggtgg |
29750874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 215
Target Start/End: Original strand, 30126402 - 30126571
Alignment:
| Q |
46 |
aggattgttggcgcgattcctgggatttgtattggtgacgtgtttttgtataggatggagttgtgtgtggttggtttacatggtcaaccacaagctggga |
145 |
Q |
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||||| ||||| |||| ||||| |||| | ||||||| |||||| ||| ||||||||| |||||||| |||||||||| || || |||||||| | |
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| T |
30126402 |
aggatagttggaccgatacctggaatttatgttggtgatgtgtttatgtttaggatggaattgtgtgtaactggtttacatatgcatcctcaagctggta |
30126501 |
T |
|
| Q |
146 |
ttgattatttgccggggagtatgagttcgaatggggaaccgattgctactagtgtgattgtttctggtgg |
215 |
Q |
| |
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|||||||||| | ||||| || ||||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
30126502 |
ttgattatttatcaaatagtatctcttataatggtgaaccaattgctactagtgtgattgtttcaggtgg |
30126571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 9708 - 9564
Alignment:
| Q |
62 |
ttcctgggatttgtattggtgacgtgtttttgtataggatggagttgtgtgtggttggtttacatggtcaaccacaagctgggattgattatttgccggg |
161 |
Q |
| |
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||||||| ||||||||||||| || ||| | ||||| | || |||||||| |||||||||| |||||||||||||||||||||||||||| | |
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| T |
9708 |
ttcctggtgtttgtattggtgatgtttttctctatagaactgaaatgtgtgtgattggtttacacggtcaaccacaagctgggattgattattcacatcc |
9609 |
T |
|
| Q |
162 |
gagtatgagttcgaatggggaaccgattgctactagtgtgattgt |
206 |
Q |
| |
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||||||||| | |||||| |||| ||||||||||||||||||| |
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| T |
9608 |
tagtatgagtactaatgggaaacccgttgctactagtgtgattgt |
9564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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