View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15365_high_11 (Length: 360)
Name: NF15365_high_11
Description: NF15365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15365_high_11 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 32 - 360
Target Start/End: Original strand, 38180375 - 38180703
Alignment:
| Q |
32 |
ctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcag |
131 |
Q |
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| T |
38180375 |
ctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcag |
38180474 |
T |
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| Q |
132 |
cggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccg |
231 |
Q |
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| T |
38180475 |
cggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccg |
38180574 |
T |
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| Q |
232 |
ggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagc |
331 |
Q |
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| T |
38180575 |
agatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgtttggcgaattggagagc |
38180674 |
T |
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| Q |
332 |
agggtttatgtgaccgtgtagtgggtatg |
360 |
Q |
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| T |
38180675 |
agggtttatgtgaccgtgtagtgggtatg |
38180703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 32 - 360
Target Start/End: Original strand, 38185044 - 38185372
Alignment:
| Q |
32 |
ctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcag |
131 |
Q |
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| T |
38185044 |
ctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgttagaaattctgagcag |
38185143 |
T |
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| Q |
132 |
cggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccg |
231 |
Q |
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| T |
38185144 |
tggcacttaagctcggacctgtaggcgatgaagtcttcgttgctttcgaaatttttaccgtcgtcgtagccatcagagaaggtggcgaaggagaggcctg |
38185243 |
T |
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| Q |
232 |
ggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagc |
331 |
Q |
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| T |
38185244 |
ggatggttggtttgttgataaggccagtgtgtaagtagatagttgtagcaaaagtgacttgtgcgccgaaagaaatgagacgcttggcgaattggagtgc |
38185343 |
T |
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| Q |
332 |
agggtttatgtgaccgtgtagtgggtatg |
360 |
Q |
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| T |
38185344 |
agggtttatgtgaccgtgtagtgggtatg |
38185372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 65 - 360
Target Start/End: Original strand, 38170594 - 38170889
Alignment:
| Q |
65 |
taagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaag |
164 |
Q |
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| T |
38170594 |
taagcaagtgaatggatgattttcttgtttggaggagagaatgatatttgtgagaaattctgagccgcgacgcgtaaactcagacatgtaggagacgatg |
38170693 |
T |
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| Q |
165 |
tcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgta |
264 |
Q |
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| T |
38170694 |
tcttcgtcgccaaaggatttttgaccgtcgtcatagccgtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgactgtata |
38170793 |
T |
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| Q |
265 |
agtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatg |
360 |
Q |
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| T |
38170794 |
agtggatagtggtagcaaaagtgacttttgcgcccaaagaaatgagacgcttggtgaattggagggcagggtttatgtgaccttgtagtgggtatg |
38170889 |
T |
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