View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15365_high_14 (Length: 349)
Name: NF15365_high_14
Description: NF15365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15365_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 32 - 337
Target Start/End: Complemental strand, 6315347 - 6315042
Alignment:
| Q |
32 |
ccatctgcccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgtggttttttccatctactatatgcctcgtgttaa |
131 |
Q |
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| T |
6315347 |
ccatctgcccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgtggtcttttccatctactatatgcctcgtgttaa |
6315248 |
T |
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| Q |
132 |
tctccaaattctaagtattttgctgctttttcttctgccatttcaaaacaacagggaactaaatagctcgttggattgttgccaggcatattccaaagct |
231 |
Q |
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| T |
6315247 |
tctccaaattctaagtattttgctgctttttcttttgccatttcaaaacaacagggaactaaatagcttgttggattgttgccaggcatattccaaagct |
6315148 |
T |
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| Q |
232 |
gcttacttcttctcttccatatattccacaacaccatagttaaaccattcataatcattgttgtgcagttgttgatgacagtaaaaataaactctgcaca |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6315147 |
gcttacttcttctcttccatatattccacaacaccatagttaaaccattcataatcattgttgtgcagttgttgatgacagtaaaaataaattctgcaca |
6315048 |
T |
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| Q |
332 |
tgatga |
337 |
Q |
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|||||| |
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| T |
6315047 |
tgatga |
6315042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 6318236 - 6318172
Alignment:
| Q |
275 |
accattcataatcattgttgtgcagttgttgatgacagtaaaaataaa--ctctgcacatgatga |
337 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||| |||| |||| |||||||||| |
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| T |
6318236 |
accattcataatccttgttgtgcagctgttgatgacagtaaaattaaattctctccacatgatga |
6318172 |
T |
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