View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15365_high_2 (Length: 471)
Name: NF15365_high_2
Description: NF15365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15365_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 21 - 449
Target Start/End: Original strand, 36978694 - 36979122
Alignment:
| Q |
21 |
ggacatcatcacagactctacatattgatttcgaattatacgtcctaacaggctcagcctggttcttttgcaccttatcatccatcactactgttccctt |
120 |
Q |
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||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36978694 |
ggacaacatcacagactctacatattgattttgaattatgcgtcctaacaggctcagcctggttcttttgcaccttatcatccatcactactgttccctt |
36978793 |
T |
|
| Q |
121 |
taatcctttcttaagaatattatctccactcttaacattggaattgaacttatcgctaacattcttctgtttcacctcctctttggactgatagatgttg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36978794 |
taatcctttcttaagaatattatctccactcttaacattggaattgaacttattgctaacatccttctgtttcacctcctctttggactgatagatgttc |
36978893 |
T |
|
| Q |
221 |
agcttctgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36978894 |
agcttctgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcg |
36978993 |
T |
|
| Q |
321 |
atgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36978994 |
atgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgt |
36979093 |
T |
|
| Q |
421 |
tcctttagtttctactgtggctgatgatg |
449 |
Q |
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| T |
36979094 |
tcctttagtttctactgtggctgatgatg |
36979122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 223 - 377
Target Start/End: Original strand, 36979752 - 36979906
Alignment:
| Q |
223 |
cttctgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgat |
322 |
Q |
| |
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||||||| |||||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||| |||||| |
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| T |
36979752 |
cttctgcggagcaggttgcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaatatgagaattcaaggttatctggctcgaa |
36979851 |
T |
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| Q |
323 |
gttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtag |
377 |
Q |
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||||||||| | || ||||| |||| |||||||| | ||| ||||||||| |||| |
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| T |
36979852 |
gttgttaccaaacataaagcacaagtccactctttcggcacttccttctgtgtag |
36979906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 36984396 - 36984462
Alignment:
| Q |
240 |
gcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaa |
306 |
Q |
| |
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| T |
36984396 |
gcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaagatgggaattcaa |
36984462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 275 - 449
Target Start/End: Original strand, 36996413 - 36996587
Alignment:
| Q |
275 |
ctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcg |
374 |
Q |
| |
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||||||||||||||| | || || ||||||||| | | ||||| | ||||||||| | || ||||| |||| ||||| || ||||| ||||||||| | |
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| T |
36996413 |
ctgtgtttcctcccagtgaggtgcgaattcaagtctttattgcttgtagttgttaccaaacataaagcacaagtccactttttctgcatttccttctgtg |
36996512 |
T |
|
| Q |
375 |
tagaactcttgagatactcttcaccagctttgtcactctttgctgttcctttagtttctactgtggctgatgatg |
449 |
Q |
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|| || ||| || ||||| |||||||| ||||||||| |||||||||||||||||| |||||| ||||||||| |
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| T |
36996513 |
tacaatcctttggaaactctccaccagctctgtcactctctgctgttcctttagtttccactgtgactgatgatg |
36996587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 259 - 449
Target Start/End: Original strand, 36980522 - 36980712
Alignment:
| Q |
259 |
agcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttaccgagcacaaagcgcaaggccactcttcc |
358 |
Q |
| |
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|||||||| | || ||||||||||||| |||||||| |||||| ||||| | ||| | ||||||||||||| | || | ||| |||| ||||||| | |
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| T |
36980522 |
agcttcactagtatccctgtgtttccttccattaaggtgggaaatcaagtctttctcacgcgatgttgttaccaaacatatagcacaagtccactctctc |
36980621 |
T |
|
| Q |
359 |
tgcagttccttctgcgtagaactcttgagatac-tcttcaccagctttgtcactctttgctgttcctttagtttctactgtggctgatgatg |
449 |
Q |
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|||| ||||||||| ||||||||| ||| || ||| ||||||| | ||||||| |||||||||||| ||||| |||||| ||||||||| |
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| T |
36980622 |
tgcacttccttctgtgtagaactc-cgaggaacttctccaccagccctttcactctctgctgttcctttggtttccactgtgactgatgatg |
36980712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 37000387 - 37000469
Alignment:
| Q |
248 |
gctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttac |
330 |
Q |
| |
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||||||||||| ||||||| ||||| |||||||||||||||| || ||||||||||| ||| ||| ||||||||||||||| |
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| T |
37000387 |
gctttcaaagctaattcacaattagccttgtgtttcctcccattgaggtgggaattcaaagttttctcgctcgatgttgttac |
37000469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 449
Target Start/End: Original strand, 36995772 - 36995883
Alignment:
| Q |
338 |
aaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgttcctttagtttctactg |
437 |
Q |
| |
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||||| |||| |||||||| ||||| | ||||||| |||||||||| || |||| ||| |||| || |||||| |||||||||||| ||||||| | |
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| T |
36995772 |
aaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacactctctgctgttcctttggtttctatta |
36995871 |
T |
|
| Q |
438 |
tggctgatgatg |
449 |
Q |
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|||||||||||| |
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| T |
36995872 |
tggctgatgatg |
36995883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 379
Target Start/End: Original strand, 36986225 - 36986329
Alignment:
| Q |
275 |
ctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcg |
374 |
Q |
| |
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||||||||| | ||| | || |||||||||||| || ||| |||| |||||||||| | || ||||| |||| |||||||| ||||| ||||||||| | |
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| T |
36986225 |
ctgtgtttctttccactcaggtgggaattcaagattttctcactcgttgttgttaccaaacataaagcacaagtccactctttctgcacttccttctgtg |
36986324 |
T |
|
| Q |
375 |
tagaa |
379 |
Q |
| |
|
||||| |
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|
| T |
36986325 |
tagaa |
36986329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 36984318 - 36984380
Alignment:
| Q |
144 |
ctccactcttaacattggaattgaacttatcgctaacattcttctgtttcacctcctctttgg |
206 |
Q |
| |
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||||| ||| ||||| ||||| ||||||| ||||| ||||| |||||||||||||||||||| |
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| T |
36984318 |
ctccattctcaacatcagaatttaacttattgctaaaattctcctgtttcacctcctctttgg |
36984380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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