View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15365_high_20 (Length: 333)
Name: NF15365_high_20
Description: NF15365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15365_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 67490 - 67166
Alignment:
| Q |
1 |
aagatttctgggtaggcagttatttcagaagaggtgtaacggagagtatcatttagtgcagattgtagagctcaaaatcactatagtttagtctctagac |
100 |
Q |
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| T |
67490 |
aagatttctgggtaggcagttatttcataagaggtgtaacggagagtatcatttagtgcagattgtagaactcaaaatcactatagtttagtctctagac |
67391 |
T |
|
| Q |
101 |
ttcagtttcttgagaaatctggagtatacatacatgttaatgcaggttatatgagccctttttcggtggattttctaaggttaaagaagaggttctacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
67390 |
ttcagtttcttgagaaatctggagtatacatacatgttaatgcaggttatatgagccctttttcggtggattttctaaggttaaagaagaggttctacaa |
67291 |
T |
|
| Q |
201 |
gatctagaattagttctgttatggtacagtttgcaaaatgctccagtggagcatgcaagttcggctcaagcaacaactgaaactctagctacagattcct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
67290 |
gatctagaattagttctgttatggtacagtttgcaaaatgctctagtggagcatgcaagttcggctcaagcaacaactgaaactctagctacagattcct |
67191 |
T |
|
| Q |
301 |
ttcaaagccttcagttccctttgct |
325 |
Q |
| |
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||||||||||||||||| ||||||| |
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| T |
67190 |
ttcaaagccttcagttctctttgct |
67166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 306
Target Start/End: Original strand, 17633281 - 17633389
Alignment:
| Q |
198 |
caagatctagaattagttctgttatggtacagtttgcaaaatgctccagtggagcatgcaagttcggctcaagcaacaactgaaactctagctacagatt |
297 |
Q |
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| T |
17633281 |
caagatttagaattagttctcttacggtactgttcgtaaaatgctcctgtggagtacacaagtttgactcgggcaataacataaactctagctacagact |
17633380 |
T |
|
| Q |
298 |
cctttcaaa |
306 |
Q |
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|||| |||| |
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| T |
17633381 |
ccttgcaaa |
17633389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 28247856 - 28247941
Alignment:
| Q |
44 |
gagtatcatttagtgcagattgtagagctcaaaatcactatagtttagtctctagacttcagtttcttgagaaatctggagtataca |
130 |
Q |
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|||||||||||||||||||||||| || ||| | || ||||||| |||||| ||||| ||| ||| | ||||||| |||||||||| |
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| T |
28247856 |
gagtatcatttagtgcagattgtacagttcacactctctatagtgtagtctttagacatcaattt-tcgagaaatagggagtataca |
28247941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 19748442 - 19748381
Alignment:
| Q |
47 |
tatcatttagtgcagattgtagagctcaaaatcactatagtttagtctctagacttcagttt |
108 |
Q |
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||||||||||||||||||||| |||||| | | || |||| |||||||||||| ||||||| |
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| T |
19748442 |
tatcatttagtgcagattgtacagctcacactgtctctagtgtagtctctagacatcagttt |
19748381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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