View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15365_high_25 (Length: 323)
Name: NF15365_high_25
Description: NF15365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15365_high_25 |
 | |
|
| [»] scaffold0356 (1 HSPs) |
| | |
|
| [»] scaffold0075 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0356 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 11574 - 11261
Alignment:
| Q |
1 |
gcgtataaaatatgagtggggaaagagactccacagcaataggacaatggaatgaggtgtccatcagtcgcagccatggaaagagcccgactaagaacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11574 |
gcgtataaaatatgagtggggaaagatactccacgacaataggacattggaatgagttgtccgtcagtcgcagccatggaaagcgcccgactaagaacct |
11475 |
T |
|
| Q |
101 |
cttcagctagacaaaaaagaagcggtgacaatgggtctccttggcaaacaccacgcgaacatgaaaagaacccaacggccttcccattaaccaatactga |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
11474 |
cttcaactagacaaaaaagaagcggtgacaatgggtctccttggcgaacaccatgcgaacaagtaaagaacccaacggctttcccattaaccaagactga |
11375 |
T |
|
| Q |
201 |
taaacgagcggattgcaaaatcaccaaaatccaatgcacaaatttttcatcaaaactaaaccgctgaagcaccgcaagaagaaaattccaatctaacgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11374 |
taaacgagcggattgcaaaatcaccaaaatccaatgcacaaatttttcatcaaaaccaaaccgctgaagcaccgcaagaagaaaattccaatctaacgta |
11275 |
T |
|
| Q |
301 |
tcgaatgcctttgc |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11274 |
tcgaatgcctttgc |
11261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 19739888 - 19739578
Alignment:
| Q |
1 |
gcgtataaaatatgagtggggaaagagactccacagcaataggacaatggaatgaggtgtccatcagtcgcagccatggaaagagcccgactaagaacct |
100 |
Q |
| |
|
||||||||||| |||||||| | |||||| |||| ||||| |||| ||| |||| |||| ||| | ||| ||||| || |||||||||||||||| |
|
|
| T |
19739888 |
gcgtataaaatctgagtgggaagagagaccccacgacaataagacattggtgtgagtcgtccgaaagttgaagcaatggagagtgcccgactaagaacct |
19739789 |
T |
|
| Q |
101 |
cttcagctagacaaaaaagaagcggtgacaatgggtctccttggcaaacaccacgcgaacatgaaaagaacccaacggccttcccattaaccaatactga |
200 |
Q |
| |
|
||||||| ||||| || ||||| || |||||||||| |||||| | ||| |||| ||| || ||||| |||||||| || |||||||||||||| ||||| |
|
|
| T |
19739788 |
cttcagccagacagaagagaagaggggacaatgggtgtccttgtcgaaccccacccgagcaagaaaaaaacccaacagctttcccattaaccaacactga |
19739689 |
T |
|
| Q |
201 |
taaacgagcggattgcaaaatcaccaaaatccaatgcacaaatttttcatcaaaactaaaccgctgaagcaccgcaagaagaaaattccaatctaacgca |
300 |
Q |
| |
|
|||||| || |||| |||||||||||| ||||||||||||| |||||||| ||||| ||||||| |||| ||| || ||| |||||||||||||| | | |
|
|
| T |
19739688 |
taaacgggctgatttcaaaatcaccaagatccaatgcacaattttttcatgaaaaccaaaccgccgaagaaccaaaataaggaaattccaatctaaggta |
19739589 |
T |
|
| Q |
301 |
tcgaatgcctt |
311 |
Q |
| |
|
||||| ||||| |
|
|
| T |
19739588 |
tcgaaagcctt |
19739578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 48730 - 48800
Alignment:
| Q |
84 |
agcccgactaagaacctcttcagctagacaaaaaagaagcggtgacaatgggtctccttggcaaacaccac |
154 |
Q |
| |
|
|||||| || || ||||||||||||||||| |||||||| || ||||| ||||| ||||| | |||||||| |
|
|
| T |
48730 |
agcccggcttagcacctcttcagctagacagaaaagaaggggggacaaggggtccccttgtcgaacaccac |
48800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 15144206 - 15144264
Alignment:
| Q |
97 |
acctcttcagctagacaaaaaagaagcggtgacaatgggtctccttggcaaacaccacg |
155 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||| ||||| ||||| | ||||||||| |
|
|
| T |
15144206 |
acctcttcagctagacagaaaagaaggggggacaaggggtccccttgtcgaacaccacg |
15144264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 9007 - 9077
Alignment:
| Q |
84 |
agcccgactaagaacctcttcagctagacaaaaaagaagcggtgacaatgggtctccttggcaaacaccac |
154 |
Q |
| |
|
|||||| || || ||||||||||||||||| |||||||| || ||||| ||||| ||||| | |||||||| |
|
|
| T |
9007 |
agcccggcttagcacctcttcagctagacagaaaagaaggggggacaaggggtccccttgtcgaacaccac |
9077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 8636213 - 8636245
Alignment:
| Q |
90 |
actaagaacctcttcagctagacaaaaaagaag |
122 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
8636213 |
actaagaacctcttcagctaaacaaaaaagaag |
8636245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University