View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15365_high_34 (Length: 302)
Name: NF15365_high_34
Description: NF15365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15365_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 28448134 - 28447982
Alignment:
| Q |
22 |
catcatcatcgatgtagaggggaggtctgtaggcctgacgcctatagaaatagacaaccactccaacaaaagattgaaggccgtaacttccaacgcacaa |
121 |
Q |
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| T |
28448134 |
catcatcatcgatgtagaggggaggtctgtaggtctgatgcctatagaaatagacaaccactccaacaaaagattgaaggccgtaacttccaacgcacaa |
28448035 |
T |
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| Q |
122 |
aataggaaccccagagagagga-----gaagcaaaggccagccaaagcccaaa |
169 |
Q |
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| T |
28448034 |
aataggaaccccagagagaggaacaccgaagccaaggccagccaaagcccaaa |
28447982 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 18690684 - 18690635
Alignment:
| Q |
94 |
attgaaggccgtaacttccaacgcacaaaataggaaccccagagagagga |
143 |
Q |
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| T |
18690684 |
attgaaggttgtaacttccaacgcaaaaactaggaacctcagagagagga |
18690635 |
T |
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