View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15365_high_9 (Length: 365)
Name: NF15365_high_9
Description: NF15365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15365_high_9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 9 - 365
Target Start/End: Original strand, 34971090 - 34971457
Alignment:
| Q |
9 |
agcacagatgaatagtgttgccattgtttttcctaaaactactactttagtgtgtcggttttatattttaaaaaatattagagctaaatgcaaggcatat |
108 |
Q |
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| T |
34971090 |
agcacagatgaatagtgttgccattatttttcctaaaactactactttagtgtgtcggttttatattttaaaaaatattagagctaaatacaaggcatat |
34971189 |
T |
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| Q |
109 |
tgtatagtcaaatctaatgatgccaaagtgatgaatattaaagggaaagattcccaagaggtggatgtgaaagagaaggaagtcacaaaggtgaatatat |
208 |
Q |
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| T |
34971190 |
tgcatagtcaaatctaatgatgccaaagtgatgaatatcaaagggaaagattcccaagaggtggatgtgaaagagaaggaagtcacaaaggtgaatatat |
34971289 |
T |
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| Q |
209 |
gcccaaattgacggtaaaggtttgatgttatgttatggagtttcagttatttgatgtaatgttgtgtaatatgtcgtcaaattatgtgatattggactct |
308 |
Q |
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| T |
34971290 |
gcccaaattgacagtaaaggtttgatgttatgttatggagtttcagttatttgatgtaatgttgtgtaatatgtcgtcaaattatgtgatgttggactct |
34971389 |
T |
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| Q |
309 |
tgttgaatatcaatcattt-----------atgtaatgttgaattgacgtaatgttaataaattatga |
365 |
Q |
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| T |
34971390 |
tgttgaatttcaatcatttatgtattgttaatgtaatgttgaattggcgtaatgttaataaattatga |
34971457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 16061350 - 16061310
Alignment:
| Q |
148 |
aaagggaaagattcccaagaggtggatgtgaaagagaagga |
188 |
Q |
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| T |
16061350 |
aaaggaaaagattcccaaaaggtggatgggaaagagaagga |
16061310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 7340654 - 7340506
Alignment:
| Q |
40 |
cctaaaactactactttagtgtgtcggttttatattttaaaaaatattagagctaaatgcaaggcatattgtatagtcaaatctaatgatgccaaagtga |
139 |
Q |
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| T |
7340654 |
cctaaatctattgctttagtgtgtcggtttcatattttgaaaaatgtaatagctaaatggaagacaaactgcatagtcaaatctaaggatgtcaaagtgg |
7340555 |
T |
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| Q |
140 |
tgaatattaaagggaaagattcccaagaggtggatgtgaaagagaagga |
188 |
Q |
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| T |
7340554 |
tgaatatcaaagagaaagatttccaagaggttgatggcaaagagaagga |
7340506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 337
Target Start/End: Original strand, 929153 - 929251
Alignment:
| Q |
240 |
gttatggagtttca-gttatttgatgtaatgttgtgtaatatgtcgtcaaattatgtgatattggactcttgttgaatatcaatcatttatgtaatgtt |
337 |
Q |
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| T |
929153 |
gttatggagttttaagttatttgatgtaatgttgtgtagtatgcagtcaatttatgtaatgttagattgttgttgaatttcaattgtttgtgtaatgtt |
929251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 188
Target Start/End: Original strand, 35249510 - 35249656
Alignment:
| Q |
42 |
taaaactactactttagtgtgtcggttttatattttaaaaaatattagagctaaatgcaaggcatattgtatagtcaaatctaatgatgccaaagtgatg |
141 |
Q |
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| T |
35249510 |
taaaactactgccttactctgtcagttttatatttctaaaaacgttagaactaaatgcaagatatactgaagagtcaaatataaggatgccaaaacggtg |
35249609 |
T |
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| Q |
142 |
aatattaaagggaaagattcccaagaggtggatgtgaaagagaagga |
188 |
Q |
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| T |
35249610 |
aatgtcacaggaaaatattctcaagaggtggacgggaaagataagga |
35249656 |
T |
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