View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15365_low_2 (Length: 340)
Name: NF15365_low_2
Description: NF15365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15365_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 332
Target Start/End: Original strand, 3155498 - 3155814
Alignment:
| Q |
6 |
aaaaaggagtacgtgacaatgagtatgtgcaaatggtatgcacgactaaacctaccacgtgaaattgacgcatacttgnnnnnnngaaacaaaacgaaaa |
105 |
Q |
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| T |
3155498 |
aaaaaggagtacgtgacaatgagtatgtgcaaatggtatgcacgactaaacctaccacgtgaaattgacgcttacttgtttttttgagacaaaacgaaaa |
3155597 |
T |
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| Q |
106 |
gcaaatctaaataaatgaatgtaaaatggagtggatctaagggtaacgtgtggttgttaaattggttttacttgataaaaaatagatttgctcaatttaa |
205 |
Q |
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| T |
3155598 |
gcaaatctaaataaatgaacgtaaaatggagtgga----------acgtgtgattgttaaattggttttacttgataaaaaatagatttgctcaagttaa |
3155687 |
T |
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| Q |
206 |
agtgttgataatgtatgatatagtacgtgtcnnnnnnnagtttaatctatatctgacattagaattttaatagcctatatataattatccacaaagaata |
305 |
Q |
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| T |
3155688 |
agtgttgataatgtatgatatagtacgagtctttttttagtttaatcaatatcttacgttagaatttgattagcctatatataattatgcacaaagaata |
3155787 |
T |
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| Q |
306 |
tctatctaacacaacaaaaaagtgtta |
332 |
Q |
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|||| |||||| |||||||||||||| |
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| T |
3155788 |
tctaattaacactacaaaaaagtgtta |
3155814 |
T |
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