View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15365_low_5 (Length: 205)

Name: NF15365_low_5
Description: NF15365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15365_low_5
NF15365_low_5
[»] chr1 (3 HSPs)
chr1 (1-121)||(8841384-8841504)
chr1 (131-164)||(47930978-47931011)
chr1 (131-161)||(5993830-5993860)
[»] chr5 (4 HSPs)
chr5 (131-169)||(35996077-35996115)
chr5 (131-169)||(19914538-19914576)
chr5 (131-169)||(27514340-27514378)
chr5 (131-169)||(29445344-29445382)
[»] chr4 (5 HSPs)
chr4 (131-169)||(14126443-14126481)
chr4 (132-168)||(48141132-48141168)
chr4 (135-169)||(19747366-19747400)
chr4 (135-169)||(19792406-19792440)
chr4 (132-169)||(7672787-7672824)
[»] chr3 (3 HSPs)
chr3 (131-169)||(8473122-8473160)
chr3 (131-169)||(53741800-53741838)
chr3 (131-169)||(55216628-55216666)
[»] chr2 (3 HSPs)
chr2 (132-169)||(1483904-1483941)
chr2 (132-169)||(2376000-2376037)
chr2 (131-164)||(36330308-36330341)
[»] chr7 (2 HSPs)
chr7 (131-169)||(23777304-23777342)
chr7 (131-168)||(10596278-10596315)
[»] chr6 (4 HSPs)
chr6 (138-168)||(12127528-12127558)
chr6 (131-169)||(12852066-12852104)
chr6 (140-169)||(9619426-9619455)
chr6 (131-168)||(31350951-31350988)


Alignment Details
Target: chr1 (Bit Score: 121; Significance: 3e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 8841504 - 8841384
Alignment:
Q  1 ccttgctagctggaattttaggtggacttcttggtgtaggtagtggatttgtcatgggccctttgtttattgaattgggaattgctccacaggtaaattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8841504 ccttgctagctggaattttaggtggacttcttggtgtaggtagtggatttgtcatgggccctttgtttattgaattgggaattgctccacaggtaaattc 8841405  T
Q  101 cagtagaatatgcattttcac 121  Q
    |||||||||||||||||||||    
T  8841404 cagtagaatatgcattttcac 8841384  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 47930978 - 47931011
Alignment:
Q  131 ctgtttcagttcagtttcagaattgttagtaatg 164  Q
    ||||||||||||||||||||||||||||||||||    
T  47930978 ctgtttcagttcagtttcagaattgttagtaatg 47931011  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 161
Target Start/End: Original strand, 5993830 - 5993860
Alignment:
Q  131 ctgtttcagttcagtttcagaattgttagta 161  Q
    |||||||||||||||||||||||||||||||    
T  5993830 ctgtttcagttcagtttcagaattgttagta 5993860  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 35996077 - 35996115
Alignment:
Q  131 ctgtttcagttcagtttcagaattgttagtaatggttca 169  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35996077 ctgtttcagttcagtttcagaattgttagtaatggttca 35996115  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 19914538 - 19914576
Alignment:
Q  131 ctgtttcagttcagtttcagaattgttagtaatggttca 169  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  19914538 ctgtttcagttcagtttcagaactgttagtaatggttca 19914576  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 27514378 - 27514340
Alignment:
Q  131 ctgtttcagttcagtttcagaattgttagtaatggttca 169  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  27514378 ctgtttcagttcagtttcagaactgttagtaatggttca 27514340  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 29445344 - 29445382
Alignment:
Q  131 ctgtttcagttcagtttcagaattgttagtaatggttca 169  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  29445344 ctgtttcagttcagtttcagaattgtaagtaatagttca 29445382  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 14126443 - 14126481
Alignment:
Q  131 ctgtttcagttcagtttcagaattgttagtaatggttca 169  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14126443 ctgtttcagttcagtttcagaattgttagtaatggttca 14126481  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 48141168 - 48141132
Alignment:
Q  132 tgtttcagttcagtttcagaattgttagtaatggttc 168  Q
    |||||||||||||||||||||||||||||||||||||    
T  48141168 tgtttcagttcagtttcagaattgttagtaatggttc 48141132  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 19747400 - 19747366
Alignment:
Q  135 ttcagttcagtttcagaattgttagtaatggttca 169  Q
    |||||||||||||||||| ||||||||||||||||    
T  19747400 ttcagttcagtttcagaactgttagtaatggttca 19747366  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 19792406 - 19792440
Alignment:
Q  135 ttcagttcagtttcagaattgttagtaatggttca 169  Q
    |||||||||||||||||| ||||||||||||||||    
T  19792406 ttcagttcagtttcagaactgttagtaatggttca 19792440  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 7672787 - 7672824
Alignment:
Q  132 tgtttcagttcagtttcagaattgttagtaatggttca 169  Q
    |||||||||||||||||| || ||||||||||||||||    
T  7672787 tgtttcagttcagtttcacaactgttagtaatggttca 7672824  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 8473160 - 8473122
Alignment:
Q  131 ctgtttcagttcagtttcagaattgttagtaatggttca 169  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  8473160 ctgtttcagttcagtttcagaactgttagtaatggttca 8473122  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 53741838 - 53741800
Alignment:
Q  131 ctgtttcagttcagtttcagaattgttagtaatggttca 169  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  53741838 ctgtttcagttcagtttcagaattcttagtaatggttca 53741800  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 55216666 - 55216628
Alignment:
Q  131 ctgtttcagttcagtttcagaattgttagtaatggttca 169  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  55216666 ctgtttcagttcagtttcagaactgttagtaatggttca 55216628  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 1483941 - 1483904
Alignment:
Q  132 tgtttcagttcagtttcagaattgttagtaatggttca 169  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  1483941 tgtttcaattcagtttcagaattgttagtaatggttca 1483904  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 2376000 - 2376037
Alignment:
Q  132 tgtttcagttcagtttcagaattgttagtaatggttca 169  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  2376000 tgtttcagttcaatttcagaattgttagtaatagttca 2376037  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 36330341 - 36330308
Alignment:
Q  131 ctgtttcagttcagtttcagaattgttagtaatg 164  Q
    ||||||| ||||||||||||||||||||||||||    
T  36330341 ctgtttctgttcagtttcagaattgttagtaatg 36330308  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 23777304 - 23777342
Alignment:
Q  131 ctgtttcagttcagtttcagaattgttagtaatggttca 169  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  23777304 ctgtttcagttcagtttcagaactgttagtaatgattca 23777342  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 10596278 - 10596315
Alignment:
Q  131 ctgtttcagttcagtttcagaattgttagtaatggttc 168  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  10596278 ctgtttcagttaagtttcagaactgttagtaatggttc 10596315  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 168
Target Start/End: Original strand, 12127528 - 12127558
Alignment:
Q  138 agttcagtttcagaattgttagtaatggttc 168  Q
    |||||||||||||||||||||||||||||||    
T  12127528 agttcagtttcagaattgttagtaatggttc 12127558  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 12852104 - 12852066
Alignment:
Q  131 ctgtttcagttcagtttcagaattgttagtaatggttca 169  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  12852104 ctgtttcagttcagtttcagaattgttggtaatagttca 12852066  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 169
Target Start/End: Complemental strand, 9619455 - 9619426
Alignment:
Q  140 ttcagtttcagaattgttagtaatggttca 169  Q
    ||||||||||||||||||||||||||||||    
T  9619455 ttcagtttcagaattgttagtaatggttca 9619426  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 31350988 - 31350951
Alignment:
Q  131 ctgtttcagttcagtttcagaattgttagtaatggttc 168  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  31350988 ctgtttccgttcagtttcagaactgttagtaatggttc 31350951  T

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