View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15366_low_1 (Length: 541)
Name: NF15366_low_1
Description: NF15366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15366_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 88 - 526
Target Start/End: Original strand, 6853098 - 6853544
Alignment:
| Q |
88 |
cttgttggtaccattttcactcttagaagttagaaattgagttgtcttattccaatatgaatgcatgtcacattgaagagaccctgtagggtataaactc |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6853098 |
cttgttggtaccattttcactcttagaagttagaaattgagttgtcttattccaatatgaatgcaggtcacattgaagagaccctgtagggtataaactc |
6853197 |
T |
|
| Q |
188 |
gcattttgtgtatttgtgataaaatactatgatattttgggatttatagatttattttagttaaaatccgacttacaagtacgagtatgggtactcag-- |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6853198 |
gcattttgtgtatttgtgataaaatactatgatattttgtgatttatagatttattttagttaaaatccgacttacaagtacgagtataggtactcaggt |
6853297 |
T |
|
| Q |
286 |
------agggtacatgcacgggtaataagattgctatccacgcgtgcatgagttctgatagagtatttttccaaactgcgggtacagaggcgggtacttt |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6853298 |
acacagagggtacatgcacgggtaataagattgctatccacgcgtgcatgagttctgatagagtatttttccaaactgcgggtacagaggcgggtacttt |
6853397 |
T |
|
| Q |
380 |
agtacctacctacccattgtcttcgctagttataatcccaagcccaaaccccttgtttttgaagtgactcatcattcactaaaacaataaaactctgcag |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6853398 |
agtacctacctacccattgtcttcgctagttataatcccaagcccaaaccccttgtttttgaagcgactcatcattcactaaaacaataaaactctgcag |
6853497 |
T |
|
| Q |
480 |
cttcatctaaacaaaaaagcttacccgctgccaagaaacataagttt |
526 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
6853498 |
cttcatctaaacaaaaaagctttcccgctgccatgaaacataagttt |
6853544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University