View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15366_low_2 (Length: 331)
Name: NF15366_low_2
Description: NF15366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15366_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 23 - 322
Target Start/End: Original strand, 45106659 - 45106960
Alignment:
| Q |
23 |
gggtgacgagtacaaaatgaaggtgaatgatctggtgaaaaccctacagcaagtgcttctgaatatgaggagttgagaaccagcaaaaccgatccgtact |
122 |
Q |
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| T |
45106659 |
gggtgacgagtacaaaatgaaggtgaatgatctggtgaaaaccctacagcaagtgcttctgaatatgaggagttgagaaccagcaaaaccgatccgtact |
45106758 |
T |
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| Q |
123 |
agtgtatcaagcaggcnnnnnnnnnnnnnnnnnnatgtaacaaattaatcaagaaaattgtgaatgaacttgaacaccatctttttaatctaaaataatc |
222 |
Q |
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|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45106759 |
agtgtatcaagcaggcttttttctttctttttttatgtaacaaattaatgaagaaaattgtgaatgaacttgaacaccatctttttaatccaaaataatc |
45106858 |
T |
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| Q |
223 |
gagaaaaacttgtataagttttgtaagagaaaggact--tatatatatcagtattacaaaataatcgttatagaaatagttattaaatatataaacctat |
320 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45106859 |
gagaaaaacttgtataagttttgtaagagaaaggaattatatatatatcagtattacaaaataatcgttatagaaatagttattagatatataaacctat |
45106958 |
T |
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| Q |
321 |
gc |
322 |
Q |
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|| |
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| T |
45106959 |
gc |
45106960 |
T |
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