View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15366_low_4 (Length: 235)

Name: NF15366_low_4
Description: NF15366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15366_low_4
NF15366_low_4
[»] chr7 (2 HSPs)
chr7 (1-232)||(39029984-39030217)
chr7 (19-47)||(43573437-43573465)
[»] chr5 (2 HSPs)
chr5 (19-47)||(189528-189556)
chr5 (19-47)||(189597-189625)
[»] chr3 (2 HSPs)
chr3 (19-47)||(3953369-3953397)
chr3 (19-47)||(41281615-41281643)
[»] chr2 (3 HSPs)
chr2 (19-47)||(2563853-2563881)
chr2 (19-47)||(9634330-9634358)
chr2 (19-47)||(16677822-16677850)
[»] chr1 (3 HSPs)
chr1 (19-47)||(6143832-6143860)
chr1 (19-47)||(35136993-35137021)
chr1 (19-47)||(48220038-48220066)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 39029984 - 39030217
Alignment:
Q  1 tgtaaatctatgattgtcttgtcaaccaaatgattgttcaaataacatgcacatcttaaaaatgttttagacgtccttcaacttaccaatggaaccgtct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||    
T  39029984 tgtaaatctatgattgtcttgtcaaccaaatgattgttcaaataacatgcaaatcttaaaaatattttagacgtccttcaacttaccgatggaaccatct 39030083  T
Q  101 cttccagacaagatacctctaatttgcataac--aacnnnnnnnggttaattaaaccaaaatgtctaaattattatttaagaagataatgtttatgtgac 198  Q
    ||||| ||||||||||||||||||| ||||||  ||        |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39030084 cttccggacaagatacctctaatttacataacaaaaaaaaaaaaggttcattaaaccataatgtctaaattattatttaagaagataatgtttatgtgac 39030183  T
Q  199 aaaccttcaatttaactacaaattaggcttcttt 232  Q
    ||||||||||||||||||||||||||||||||||    
T  39030184 aaaccttcaatttaactacaaattaggcttcttt 39030217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 43573465 - 43573437
Alignment:
Q  19 ttgtcaaccaaatgattgttcaaataaca 47  Q
    |||||||||||||||||||||||||||||    
T  43573465 ttgtcaaccaaatgattgttcaaataaca 43573437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 189556 - 189528
Alignment:
Q  19 ttgtcaaccaaatgattgttcaaataaca 47  Q
    |||||||||||||||||||||||||||||    
T  189556 ttgtcaaccaaatgattgttcaaataaca 189528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 189625 - 189597
Alignment:
Q  19 ttgtcaaccaaatgattgttcaaataaca 47  Q
    |||||||||||||||||||||||||||||    
T  189625 ttgtcaaccaaatgattgttcaaataaca 189597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 3953397 - 3953369
Alignment:
Q  19 ttgtcaaccaaatgattgttcaaataaca 47  Q
    |||||||||||||||||||||||||||||    
T  3953397 ttgtcaaccaaatgattgttcaaataaca 3953369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 41281643 - 41281615
Alignment:
Q  19 ttgtcaaccaaatgattgttcaaataaca 47  Q
    |||||||||||||||||||||||||||||    
T  41281643 ttgtcaaccaaatgattgttcaaataaca 41281615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 2563853 - 2563881
Alignment:
Q  19 ttgtcaaccaaatgattgttcaaataaca 47  Q
    |||||||||||||||||||||||||||||    
T  2563853 ttgtcaaccaaatgattgttcaaataaca 2563881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 9634358 - 9634330
Alignment:
Q  19 ttgtcaaccaaatgattgttcaaataaca 47  Q
    |||||||||||||||||||||||||||||    
T  9634358 ttgtcaaccaaatgattgttcaaataaca 9634330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 16677822 - 16677850
Alignment:
Q  19 ttgtcaaccaaatgattgttcaaataaca 47  Q
    |||||||||||||||||||||||||||||    
T  16677822 ttgtcaaccaaatgattgttcaaataaca 16677850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 6143832 - 6143860
Alignment:
Q  19 ttgtcaaccaaatgattgttcaaataaca 47  Q
    |||||||||||||||||||||||||||||    
T  6143832 ttgtcaaccaaatgattgttcaaataaca 6143860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 35136993 - 35137021
Alignment:
Q  19 ttgtcaaccaaatgattgttcaaataaca 47  Q
    |||||||||||||||||||||||||||||    
T  35136993 ttgtcaaccaaatgattgttcaaataaca 35137021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 48220066 - 48220038
Alignment:
Q  19 ttgtcaaccaaatgattgttcaaataaca 47  Q
    |||||||||||||||||||||||||||||    
T  48220066 ttgtcaaccaaatgattgttcaaataaca 48220038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University