View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15367_high_2 (Length: 554)
Name: NF15367_high_2
Description: NF15367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15367_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 21 - 531
Target Start/End: Original strand, 56277268 - 56277787
Alignment:
| Q |
21 |
gaggggtctctgaacagagacgtaatctctcatattctcacacgcgttccggccaagcctttgcttagcatgaaatgcatttccagagggtggaacaaca |
120 |
Q |
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| T |
56277268 |
gagggttctctcaacagagacgtcatctctcatattctcacacgcgttccggccaaacctttgcttagcatgaaatgcatttccagaggttggaaccaca |
56277367 |
T |
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| Q |
121 |
tcatttcaagccgttcattcatcaaagatcaactcaaaaacactaatcttgttttaaatgcttttattgttcaagataggtacatgttctgcaaacacga |
220 |
Q |
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| T |
56277368 |
tcatttcaagccgttcattcatcaaagatcaactcaaaaacacaaatcttgttttaaatggttttattgttcaagataggtacatgttctgcaaacacga |
56277467 |
T |
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| Q |
221 |
tgttaaaaccattagttacattcctgtccaacccaaa---aacgctgctaaactagttgttcaccacaatgttttttcttttcttcctcaagatgttgtg |
317 |
Q |
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| T |
56277468 |
tgttaaaaccattagttacattcctgtggaacccaaaaacaacgctgctaaactagttgttcaccacaatgttttttcttttcttcctcaagatgttgtt |
56277567 |
T |
|
| Q |
318 |
cttttgtcatcttgtaaaggaattctttgctgccgtacctgttttccttccccaaatccaaccatctatctctgtaatccttcaaacaaagactggattc |
417 |
Q |
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| T |
56277568 |
gttttggcttcctgtaaaggaattgtttgctgccgtacctgttttccttccccaaatccaaccatctatctctgcaatccttcaaacaaagactttattc |
56277667 |
T |
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| Q |
418 |
aattcaactgccctcctcaatgtcacattactgatagcatagctcttgc------------ttttgattttgacccttccaaattcaaattcaaattggt |
505 |
Q |
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| T |
56277668 |
aattcaactgccctcctcaatgtgacataactgatagcatagctcttgcttttgattttgattttgattttgacccttc------caaattcaaattggt |
56277761 |
T |
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| Q |
506 |
aagggtgaaacgcattcagaagtatc |
531 |
Q |
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| T |
56277762 |
aagggtgaaacgcattcagaagtatc |
56277787 |
T |
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