View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15367_high_8 (Length: 281)
Name: NF15367_high_8
Description: NF15367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15367_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 17808061 - 17807797
Alignment:
| Q |
1 |
tccgtgcttgggattacatcgcattgctgaattgaagttgcggtgttctggtttgggtctattcgaccctgggctgtgaccatgttgttttggttggcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17808061 |
tccgtgcttgggattacatcgcattgctgaattgaagttgcggtgttctggtttgggtctattcgaccctgggctgtgaccatgttgttttggttggcca |
17807962 |
T |
|
| Q |
101 |
tgggctttcgggccacgagtttgcacttctgcaacacaacagctgcgtctccaaagataaagtcaatggtaccggtaatgaaggagtcacggtaaaattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17807961 |
tgggctttcgggccacgagtttgcacttctgcaacacaacagctgcgtctccaaagataaagtcaatggtaccggtaatgaaggagtcacggtaaaattg |
17807862 |
T |
|
| Q |
201 |
ccggttggtgtgtgcgtatagagtgtcttgaaatgcatcaattttgcaacggttaatgacagatc |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17807861 |
tcggttggtgtgtgcgtatagagtgtcttgaaatgcatcaattttgcaacggttaatgacagatc |
17807797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 17777363 - 17777109
Alignment:
| Q |
6 |
gcttgggattacatcgcattgctgaattgaagttgcggtgttctggtttgggtctattcgaccctgggctgtgaccatgttgttttggttggccatgggc |
105 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||| |||||||||||||||||| |||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
17777363 |
gcttggtattacgtcacattgctgaattgaagttgcagtgttctggtttgggtcttctcgaccttgggcagtgaccatgtttttttggttggccatgggt |
17777264 |
T |
|
| Q |
106 |
tttcgggccacgagtttgcacttctgcaacacaacagctgcgtctccaaagataaagtcaatggtaccggtaatgaaggagtcacggtaaaattgccggt |
205 |
Q |
| |
|
||||||||| | ||||||| |||||| || ||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
17777263 |
tttcgggccgcaagtttgctcttctggaaaacaacagctgcgtttccaaagataaagtcaacggtaccggtaatgtatgagtcacggtaaaattgtcggt |
17777164 |
T |
|
| Q |
206 |
tggtgtgtgcgtatagagtgtcttgaaatgcatcaattttgcaacggttaatgac |
260 |
Q |
| |
|
||| |||||| || ||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
17777163 |
tggagtgtgcatagagagtgtcttgaaatgcatcaattttgcagcggttgatgac |
17777109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 63 - 264
Target Start/End: Complemental strand, 17821903 - 17821702
Alignment:
| Q |
63 |
tcgaccctgggctgtgaccatgttgttttggttggccatgggctttcgggccacgagtttgcacttctgcaacacaacagctgcgtctccaaagataaag |
162 |
Q |
| |
|
|||||| |||||||| | ||| |||||||||||||||||||| || |||||||| | ||||||||||| |||||||||||||| | ||||||||| ||| |
|
|
| T |
17821903 |
tcgaccttgggctgtaaacatattgttttggttggccatgggtttacgggccaccaacttgcacttctggaacacaacagctgcatttccaaagatgaag |
17821804 |
T |
|
| Q |
163 |
tcaatggtaccggtaatgaaggagtcacggtaaaattgccggttggtgtgtgcgtatagagtgtcttgaaatgcatcaattttgcaacggttaatgacag |
262 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| |||||||||| ||||||||| |||||||||||||| || ||||| ||||||||| ||||||| |
|
|
| T |
17821803 |
tcaatggtacctgtaatgacagagtcacggtaaaactgccggttggagtgtgcgtaaagagtgtcttgaaaggcgtcaatgcggcaacggttgatgacag |
17821704 |
T |
|
| Q |
263 |
at |
264 |
Q |
| |
|
|| |
|
|
| T |
17821703 |
at |
17821702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University