View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15367_high_9 (Length: 259)
Name: NF15367_high_9
Description: NF15367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15367_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 34690959 - 34690730
Alignment:
| Q |
13 |
attatactaataccaagattttgtaaaagctctaaaatatagtttttgtcaaaatcgtggtgtcgtgatttcgctatttcatcgtcaatctagacatgta |
112 |
Q |
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| T |
34690959 |
attatactaataccaagattttgtaaaagctctaaaatatagtttttctcaaaatcgtggtggcgtgatttcgctatttcatcgtcaatctagacatgca |
34690860 |
T |
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| Q |
113 |
gttaattttaaggagactaaaattgtcaatttaattatatctgttatttattatcaatggttttgcttattatttgagccaatactattgcctactggct |
212 |
Q |
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| T |
34690859 |
gttaattttaaggtgactaaaattgtcaatttaattatatctgttatttattatcaatggttttgcttattatttgagccaatactattgcctactggct |
34690760 |
T |
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| Q |
213 |
ctctgtttcaactagctagaacatgagaat |
242 |
Q |
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| T |
34690759 |
ctctgtttcaactagctaggacatgagaat |
34690730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 3675667 - 3675628
Alignment:
| Q |
29 |
gattttgtaaaagctctaaaatatagtttttgtcaaaatc |
68 |
Q |
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| T |
3675667 |
gattttgttaaagctctaaagtatagtttttgtcaaaatc |
3675628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 27858229 - 27858184
Alignment:
| Q |
29 |
gattttgtaaaagctctaaaatatagtttttgtcaaaatcgtggtg |
74 |
Q |
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||||||| ||||||||||||| ||| ||||||||||||||||||| |
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| T |
27858229 |
gattttgataaagctctaaaatgtagcttttgtcaaaatcgtggtg |
27858184 |
T |
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