View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15367_low_1 (Length: 724)
Name: NF15367_low_1
Description: NF15367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15367_low_1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 641; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 18 - 724
Target Start/End: Original strand, 34370261 - 34370969
Alignment:
| Q |
18 |
gaaaatgtagcagaggacattggagaaaagggaggaatgaaaagagaggggaatccctcacattgttttggataatgttttctagggaagataaaaaata |
117 |
Q |
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| T |
34370261 |
gaaaatgtagcagaggacattggagaaaagggaggaatgaaaagagaggggaatccctcacattgttttggataatgttttctagggaagataaaaaata |
34370360 |
T |
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| Q |
118 |
atatgtatgagtaa---atattttctttgttttcgagtattttaaacagagtgaaaaggaattagaaacttataaaaatttccaatgtcttatcccgatg |
214 |
Q |
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| T |
34370361 |
atatgtatgagtaataaatattttctttgttttcgagtattttaaacagagtgaaaaggaattagaaacttataaaaatttccaatgtcttatcccgatg |
34370460 |
T |
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| Q |
215 |
tatgtcgggttatgcttggagtttggaggattattacaatgagttacatcaactgcacaagttgaatttattatcttccgcaccaatgaaattagacacc |
314 |
Q |
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| T |
34370461 |
tatgtcgggttatgcttggagtttgaaggattattacaatgagttacatcaactgcacaagttgaatttattttcttccgcaccaatgaaattagacacc |
34370560 |
T |
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| Q |
315 |
atatatttccctaaaatttatgttattaggtatatgggtaatctcacttatatagagagctcaacatccattttttcagccaaagtgagacttttagtca |
414 |
Q |
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| T |
34370561 |
atatatttccct-aaatttatgttattaggtatatgggtaatctcacttatatagagagctcaacatccattttttcatccaaagtgagacttttagtca |
34370659 |
T |
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| Q |
415 |
caaatggatgatcatctnnnnnnnnngagtcatctcacttattgtgcacaatgtgataatttagggtttttaaggcaaacaaagatggatttttgtatgg |
514 |
Q |
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| T |
34370660 |
caaatggatgatcatctaaaaaaaaagagtcatctcacttattgtgcacaatgtgataatttagggtttttaaggcaaacaaagatggatttttgtatgg |
34370759 |
T |
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| Q |
515 |
agctgccaaaaggagctgcctcaaaacttggagaaatgggagtggagtctaccataaagcaatttaaatatatgatccaatacaaaaatataattgccaa |
614 |
Q |
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| T |
34370760 |
agctgccaaaaggagctgcctcaaaacttggagaaatgggagtggagtctatcataaagcaatttaaatatatgatccaatacaaaaatataattgccaa |
34370859 |
T |
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| Q |
615 |
tttgaatgaagagcacaataatttggactctttgagacaatcattgcaagggtgggtggatgcagaaagcacaaaaggaaacgaaattccacgtaacgtg |
714 |
Q |
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| T |
34370860 |
tttgaatgaagagcacaataatttggattctttgagacaatcattgcaagggtgggtggatgcagaaagcacaaaaggaaacgaaattccacgtaacgtg |
34370959 |
T |
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| Q |
715 |
ttgaactggc |
724 |
Q |
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| T |
34370960 |
ttgaactggc |
34370969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 521 - 635
Target Start/End: Complemental strand, 34555766 - 34555652
Alignment:
| Q |
521 |
caaaaggagctgcctcaaaacttggagaaatgggagtggagtctaccataaagcaatttaaatatatgatccaatacaaaaatataattgccaatttgaa |
620 |
Q |
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|||||| ||||| |||||||||||||||| ||| |||| ||||||| | ||||| ||| ||||| ||||||| ||||| | || |||||| | ||||| |
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| T |
34555766 |
caaaagaagctgtctcaaaacttggagaattggcagtgcagtctacagtgaagcagtttgaatatgtgatccagcacaaacaaattattgccgacttgaa |
34555667 |
T |
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| Q |
621 |
tgaagagcacaataa |
635 |
Q |
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| T |
34555666 |
ggaagaacacaataa |
34555652 |
T |
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Back To:
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