View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15367_low_10 (Length: 276)
Name: NF15367_low_10
Description: NF15367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15367_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 32118698 - 32118935
Alignment:
| Q |
20 |
aggtagttaataaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtccattctaccaggccttaatagagcaggatcaagcc |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32118698 |
aggtagttaataaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtccattctaccaggtcttaatagagcaggatcaagcc |
32118797 |
T |
|
| Q |
120 |
tttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctgttg |
219 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
32118798 |
tgtctttgtgatttgttgtgaatacaattatgtgttcttctccgcagcatgaccaaagaccatcaacagcattcaatagtcctgaaagtgtcacctgttg |
32118897 |
T |
|
| Q |
220 |
acattatcaacaaacgttaacgtaaattatgaacaaat |
257 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |
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|
| T |
32118898 |
acaatatcaacaaacgttaacgtaaattatgaacaaat |
32118935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 32156614 - 32156820
Alignment:
| Q |
16 |
gcaaaggtagttaataaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtccattctaccaggccttaatagagcaggatca |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
32156614 |
gcaaaggtagttaataatcaatttcttaaaagcagaaaagttgcaatatgacaagtgaatctgcttgtctattctaccaggccttaatagagcaggatca |
32156713 |
T |
|
| Q |
116 |
agcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacct |
215 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32156714 |
agcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacct |
32156813 |
T |
|
| Q |
216 |
gttgaca |
222 |
Q |
| |
|
||||||| |
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|
| T |
32156814 |
gttgaca |
32156820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 32174394 - 32174613
Alignment:
| Q |
20 |
aggtagttaataaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtccattctaccaggccttaatagagcaggatcaagcc |
119 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| |
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| T |
32174394 |
aggtagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccaggccttaacagagcaggatcaagcc |
32174493 |
T |
|
| Q |
120 |
tttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctgttg |
219 |
Q |
| |
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| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32174494 |
tgtctttgtgatttgttgtgaatacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctgttg |
32174593 |
T |
|
| Q |
220 |
acattatcaacaaacgttaa |
239 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32174594 |
acattatcaacaaacgttaa |
32174613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 32212105 - 32211904
Alignment:
| Q |
16 |
gcaaaggtagttaataaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtccattctaccaggccttaatagagcaggatca |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32212105 |
gcaaaggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttaatagagcaggatca |
32212006 |
T |
|
| Q |
116 |
agcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacct |
215 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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|
| T |
32212005 |
agcctttctttgtgatttgttgtgacaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcccgaaagtgtcatct |
32211906 |
T |
|
| Q |
216 |
gt |
217 |
Q |
| |
|
|| |
|
|
| T |
32211905 |
gt |
32211904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 32182476 - 32182699
Alignment:
| Q |
16 |
gcaaaggtagttaataaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtccattctaccaggccttaatagagcaggatca |
115 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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|
| T |
32182476 |
gcaaaggtagttaacaaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatca |
32182575 |
T |
|
| Q |
116 |
agcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
32182576 |
agcctttctttgtgatttgttgtgaaaacaattatgtgttcctctccacaacatgaccaaagaccatctgtcgcattcaatagtcctgaaagtgtcacct |
32182675 |
T |
|
| Q |
216 |
gttgacattatcaacaaacgttaa |
239 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
32182676 |
gttgacattatcaacaaacgttaa |
32182699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 32110431 - 32110634
Alignment:
| Q |
17 |
caaaggtagttaataaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtccattctaccaggccttaatagagcaggatcaa |
116 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
32110431 |
caaaggtagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatcaa |
32110530 |
T |
|
| Q |
117 |
gcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctg |
216 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32110531 |
gtctgtctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtcatctg |
32110630 |
T |
|
| Q |
217 |
ttga |
220 |
Q |
| |
|
|||| |
|
|
| T |
32110631 |
ttga |
32110634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 32157724 - 32157925
Alignment:
| Q |
16 |
gcaaaggtagttaataaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtccattctaccaggccttaatagagcaggatca |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32157724 |
gcaaaggtagttagtaaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttaatagagcaggatca |
32157823 |
T |
|
| Q |
116 |
agcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacct |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| || |
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|
| T |
32157824 |
agcctgtctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccagagaccatctgtcgcattcaatagtcccgaaagtgtcatct |
32157923 |
T |
|
| Q |
216 |
gt |
217 |
Q |
| |
|
|| |
|
|
| T |
32157924 |
gt |
32157925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 32207030 - 32206826
Alignment:
| Q |
16 |
gcaaaggtagttaataaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtccattctaccaggccttaatagagcaggatca |
115 |
Q |
| |
|
|||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
32207030 |
gcaaaggtagttaacaaccaattgcttcaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggtcttagcagagcaggatca |
32206931 |
T |
|
| Q |
116 |
agcctttctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacct |
215 |
Q |
| |
|
||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32206930 |
agcttgtctttgtgatttgttgtgaatacaattatgtgttcttctccacagcatgaccaaagaccatctactgcattcaacagtcctgaaagtgtcacct |
32206831 |
T |
|
| Q |
216 |
gttga |
220 |
Q |
| |
|
||||| |
|
|
| T |
32206830 |
gttga |
32206826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 32152541 - 32152639
Alignment:
| Q |
16 |
gcaaaggtagttaataaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtccattctaccaggccttaatagagcaggatc |
114 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |||||| |||| |
|
|
| T |
32152541 |
gcaaaggtagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaaatgaatttgcttgtccattttaccaggccttaacagagcatgatc |
32152639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 2821226 - 2821156
Alignment:
| Q |
16 |
gcaaaggtagttaataaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtcca |
86 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2821226 |
gcaaaggtagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtcca |
2821156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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