View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15367_low_3 (Length: 514)
Name: NF15367_low_3
Description: NF15367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15367_low_3 |
 | |
|
| [»] scaffold0464 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 12735065 - 12734569
Alignment:
| Q |
1 |
gctattcgaaatattcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattca |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
12735065 |
gctattcgaaatattaaaaatatgaatgaatatgaatggaatgatatttcagtcaaccaatttgtgatcgtatcacttgttctggctacagagacattta |
12734966 |
T |
|
| Q |
101 |
ggcagttgctgccacccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaaggg |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12734965 |
ggcagttgttgccacccaacggttttgttgaaataccacctgttgagccatctgttactgtattgatggatcgtctatgtttttctcaccgtttcaaggg |
12734866 |
T |
|
| Q |
201 |
aacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggc |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12734865 |
aacccattttgttttatggatgatgttggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggc |
12734766 |
T |
|
| Q |
301 |
attactgattcactggaatatggttctcaattgttcttgtttccgttgtacctttctgagagtgacaacacacttataatggcaagcaatcaaccaagcc |
400 |
Q |
| |
|
|| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12734765 |
atcagtgatttactggaatatggttctcaattgttcttgtttccgttgtacctttctgagagtgacaacacacttataatggcaagcaatcaaccaagcc |
12734666 |
T |
|
| Q |
401 |
atgcaattatctataattggagagataaaagggttgagcaaattaaatctcttcacaatgtaatattgtggtttcaaaccagggattattttgaaag |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12734665 |
atgcaattatctataattggagagataaaagggttgaccaaattaaatctcttgacaatgtaataatgtggtttcaaaccagggattattttgaaag |
12734569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 497
Target Start/End: Complemental strand, 32579129 - 32578623
Alignment:
| Q |
12 |
tattcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttgctg |
111 |
Q |
| |
|
||||||||||| || |||||||||| ||||||||||||||||| | |||||| | || |||||||||| |||| |||| ||||||| | | || |||||| |
|
|
| T |
32579129 |
tattcgaaataagactgaatatgaaaggaatgatatttcaatcgagcaatttctcattttatcacttgatctgactacggagacataccgacatttgctg |
32579030 |
T |
|
| Q |
112 |
ccacccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttg |
211 |
Q |
| |
|
||| | | || ||||||||||||||||| ||||||||| |||||||||| |||||| || ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32579029 |
ccatcgcagggatttgttgaagtaccaccggttgagccagctgttactgtgttgatggattgtctatgtttttctcaccgtttcaaggagacccattttg |
32578930 |
T |
|
| Q |
212 |
ttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattactgattc |
311 |
Q |
| |
|
||||||||||||||||||| | ||||||||| || ||||||| |||||| ||||| |||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
32578929 |
ttttatggatgatgatggagtacggagttcacgagtcttggactcaattcctcaagattagttttcaggaccttcaaattgattatggcattagtgattc |
32578830 |
T |
|
| Q |
312 |
actggaat---atggttctcaattgttcttgtttccgttgtacctttctgagagtgacaacacacttataatggcaagcaatcaacca------------ |
396 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| ||||||||||| ||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
32578829 |
actggaatatgatggttctcaattgttcttgtatccattgtacctttccgagagtgacggcacacttataatggcaagcaatcaacaaggctatgacggt |
32578730 |
T |
|
| Q |
397 |
------agccatgcaattatctataattggagagataaaagggttgagcaaattaaatctcttcacaatgtaatattgtggtttcaaaccagggattatt |
490 |
Q |
| |
|
| |||||||||| ||||| |||||||| ||||||||||||||||||||| |||| || || ||| ||||||||||||||| |||| || |||| |
|
|
| T |
32578729 |
catgacaaccatgcaattctctatgattggagaaataaaagggttgagcaaattacatctgttgacgatgaaatattgtggtttcataccaaggcttatg |
32578630 |
T |
|
| Q |
491 |
ttgaaag |
497 |
Q |
| |
|
||||||| |
|
|
| T |
32578629 |
ttgaaag |
32578623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 25901363 - 25901276
Alignment:
| Q |
192 |
tttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcag |
279 |
Q |
| |
|
||||||||||| |||||||||| |||||| |||| ||| || |||||||||| |||||||||||||| | |||||||||| |||| |
|
|
| T |
25901363 |
tttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcag |
25901276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 25915381 - 25915294
Alignment:
| Q |
192 |
tttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcag |
279 |
Q |
| |
|
||||||||||| |||||||||| |||||| |||| ||| || |||||||||| |||||||||||||| | |||||||||| |||| |
|
|
| T |
25915381 |
tttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcag |
25915294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 12 - 497
Target Start/End: Original strand, 7867 - 8370
Alignment:
| Q |
12 |
tattcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttgctg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7867 |
tattcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatcgtatcacttgttctggctacagagacatttaggcagttgctg |
7966 |
T |
|
| Q |
112 |
ccacccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7967 |
ccacccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttg |
8066 |
T |
|
| Q |
212 |
ttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattactgattc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8067 |
ttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattagtgattc |
8166 |
T |
|
| Q |
312 |
actggaatatggttctcaattgttcttgtttccgttgtacctttctgagagtgacaacacacttataatggcaagcaatcaac----------------- |
394 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8167 |
actagagtatggttctcaattgttcttgtttccgttgtacctctctgagagtgacaacacacttataatggcaagcaatcaacaaggctatggtgatgat |
8266 |
T |
|
| Q |
395 |
-caagccatgcaattatctataattggagagataaaagggttgagcaaattaaatctcttcacaatgtaatattgtggtttcaaaccagggattattttg |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8267 |
aaaagccatgcaattatctataattggagagataaaagggttgagcaaattaaatctcttgacaatgtaataatgtggtttcaaaccagggattattttg |
8366 |
T |
|
| Q |
494 |
aaag |
497 |
Q |
| |
|
|||| |
|
|
| T |
8367 |
aaag |
8370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 28 - 497
Target Start/End: Original strand, 19779424 - 19779911
Alignment:
| Q |
28 |
gaatatgaatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttgctgccacccaacggttttg |
127 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||| | ||| | ||||||| |||| |||| ||||| | | || |||| |||||| | || |||| |
|
|
| T |
19779424 |
gaatatgagtggaatgatatttcaattgatcaatttctcatcctctcacttgatctgactaccgagacgtaccaacatttgcggccacctcagggatttg |
19779523 |
T |
|
| Q |
128 |
ttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttgttttatggatgatgat |
227 |
Q |
| |
|
|||| |||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |
|
|
| T |
19779524 |
ttgatgtaccacctgttgatccagctgttactgtattgatggattgtctatgtttttctcaccgttccaaggagacccattttgttttatggttgatgat |
19779623 |
T |
|
| Q |
228 |
ggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattactgattcactggaatatggttct |
327 |
Q |
| |
|
||| | |||||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
19779624 |
ggagtacggagttcaagactcttggactcaattcctcaaaattagttttcaggaccttcaaattgattatggcattagtgattcactggattatggttct |
19779723 |
T |
|
| Q |
328 |
caattgttcttgtttccgttgtacctttctgagagtgacaacacacttataatggcaagcaatcaa-----cca-------------agccatgcaatta |
409 |
Q |
| |
|
||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |
|
|
| T |
19779724 |
caattgtatttgtatccattgtacctttctgagagtgacaacacacttataatggcaagcaatcaagaaggccacgatggttatgacaaccatgcaattc |
19779823 |
T |
|
| Q |
410 |
tctataattggagagataaaagggttgagcaaattaaatctcttcacaatgtaatattgtggtttcaaaccagggattattttgaaag |
497 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| |||| || |||||| ||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
19779824 |
tctataattggagagataaaacggtagagcaaattacatctgttgacaatgaaatattgtggtttcataccaaggattatgttgaaag |
19779911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 28 - 497
Target Start/End: Complemental strand, 19887959 - 19887472
Alignment:
| Q |
28 |
gaatatgaatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttgctgccacccaacggttttg |
127 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||| | ||| | ||||||| |||| |||| ||||| | | || |||| |||||| | || |||| |
|
|
| T |
19887959 |
gaatatgagtggaatgatatttcaattgatcaatttctcatcctctcacttgatctgactaccgagacgtaccaacatttgcggccacctcagggatttg |
19887860 |
T |
|
| Q |
128 |
ttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttgttttatggatgatgat |
227 |
Q |
| |
|
|||| |||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |
|
|
| T |
19887859 |
ttgatgtaccacctgttgatccagctgttactgtattgatggattgtctatgtttttctcaccgttccaaggagacccattttgttttatggttgatgat |
19887760 |
T |
|
| Q |
228 |
ggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattactgattcactggaatatggttct |
327 |
Q |
| |
|
||| | |||||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
19887759 |
ggagtacggagttcaagactcttggactcaattcctcaaaattagttttcaggaccttcaaattgattatggcattagtgattcactggactatggttct |
19887660 |
T |
|
| Q |
328 |
caattgttcttgtttccgttgtacctttctgagagtgacaacacacttataatggcaagcaatcaacca------------------agccatgcaatta |
409 |
Q |
| |
|
||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
19887659 |
caattgtatttgtatccattttacctttctgagagtgacaacacacttataatggcaagcaatcaacaaggctacgatggttatgacaaccatgcaatta |
19887560 |
T |
|
| Q |
410 |
tctataattggagagataaaagggttgagcaaattaaatctcttcacaatgtaatattgtggtttcaaaccagggattattttgaaag |
497 |
Q |
| |
|
||||||| ||||||||||||| ||| |||||||||| |||| || |||||| ||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
19887559 |
tctataactggagagataaaacggtagagcaaattacatctgttgacaatgaaatattgtggtttcataccaaggattatgttgaaag |
19887472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 19357713 - 19358014
Alignment:
| Q |
12 |
tattcgaaatatgaatga---atatgaatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttg |
108 |
Q |
| |
|
|||||||||||||| ||| |||||||||| ||||||| |||| | |||||||||||| | ||||||| |||||| || ||||||| ||||||||| |
|
|
| T |
19357713 |
tattcgaaatatgactgatcaatatgaatggcgtgatattacaattgatcaatttgtgatcgtctcacttgatctggccacggagacatataggcagttg |
19357812 |
T |
|
| Q |
109 |
ctgccacccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccatt |
208 |
Q |
| |
|
|||||||| | |||||||||||||||||||||| || |||||| ||| |||||||||||| || ||||||||||||||||| |||||| || ||||||| |
|
|
| T |
19357813 |
ctgccacctagcggttttgttgaagtaccacctattcagccatttgtaactgtattgatggatagtctatgtttttctcactatttcaaagggacccatt |
19357912 |
T |
|
| Q |
209 |
ttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattactga |
308 |
Q |
| |
|
| |||||||||| |||||||||||| ||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
19357913 |
tcgttttatggaagatgatggaatttggagttcaagagtcttggactcaattcttaaaaattagttttcaggatcttcaaattgattatggcagtagtga |
19358012 |
T |
|
| Q |
309 |
tt |
310 |
Q |
| |
|
|| |
|
|
| T |
19358013 |
tt |
19358014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 12 - 297
Target Start/End: Complemental strand, 19351333 - 19351048
Alignment:
| Q |
12 |
tattcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacat-tcaggcagttgct |
110 |
Q |
| |
|
||||| |||||| | | ||||| |||||||||||||| |||| | ||||||||||| | ||||||| ||||| ||| ||||||| ||| ||||| | |
|
|
| T |
19351333 |
tattcaaaatattactaaatataaatggaatgatattagaatcgagcaatttgtgattatttcacttgatctgggtacggagacatatcaa-cagttttt |
19351235 |
T |
|
| Q |
111 |
gccacccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccatttt |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||||| | |||| | ||||||||| |
|
|
| T |
19351234 |
gccacctcgtggttttgttgaagtaccacctgctgagccatccgttactgtattgatggattgtctatgtttttctcacaatctcaaaaggacccatttt |
19351135 |
T |
|
| Q |
211 |
gttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattat |
297 |
Q |
| |
|
||||||||| |||||||||||| |||||| | || ||||||| || ||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19351134 |
gttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattgattat |
19351048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 393
Target Start/End: Original strand, 19721827 - 19722211
Alignment:
| Q |
12 |
tattcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacat-tcaggcagttgct |
110 |
Q |
| |
|
||||||||| | || ||| ||| |||||| |||||||| | || | |||||||| || | || |||| ||||||||| ||||||| ||| ||| || | |
|
|
| T |
19721827 |
tattcgaaacacgactgagtatcaatggactgatattttagtcgagcaatttgtaattgtctcgcttgatctggctacggagacatatcaa-cagctgtt |
19721925 |
T |
|
| Q |
111 |
gccacccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccatttt |
210 |
Q |
| |
|
|||||| | || ||||||||||||||| |||||||||| |||||||||||||||||| | ||||||||||||||||| |||| |||| ||||| |
|
|
| T |
19721926 |
gccacctgaggggtttgttgaagtaccaactgttgagccgtctgttactgtattgatggactgtctatgtttttctcacagttttcagggtt---atttt |
19722022 |
T |
|
| Q |
211 |
gttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattg------attatggcatta |
304 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||| |||||| |||||||| |||||| || ||| | |||||| ||||| |||||| |
|
|
| T |
19722023 |
gttttatggaagatgatggaatttggagttcaagattcttggactcaattcctcaaaatcagtttttagaatcatgaaattgatgattattatcgcatta |
19722122 |
T |
|
| Q |
305 |
ctgattcactggaatatggttctcaattgttcttgtttccgttgtacctttctgagagtgacaacacacttataatggcaagcaatcaa |
393 |
Q |
| |
|
|||| || ||||| ||||||||||||| |||| || |||| | |||| |||||| || ||||| |||||||||||||||||| |
|
|
| T |
19722123 |
gtgatcttctaccatatgattctcaattgttcctgttcccattgtgcgtttccgagagtaggaatacactaataatggcaagcaatcaa |
19722211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 19344646 - 19344565
Alignment:
| Q |
205 |
cattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttc |
286 |
Q |
| |
|
||||||||| ||||| |||||||||||| |||||| || | ||||||| ||||||||| ||||||||||||||| |||||| |
|
|
| T |
19344646 |
cattttgttatatggcagatgatggaatttggagttgaacaatcttggactcaatttcttaaaattagttttcagaatcttc |
19344565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 29431071 - 29430979
Alignment:
| Q |
206 |
attttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatg |
298 |
Q |
| |
|
|||||||| ||||| ||||||| |||| || | | |||||||||||| ||||| || |||||||||| ||||||||||||||| ||||||| |
|
|
| T |
29431071 |
attttgttatatggcggatgatgaaatttggggctaaagattcttggacccaattccttaaaattagttatcaggatcttcaaatagattatg |
29430979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 29454173 - 29454089
Alignment:
| Q |
206 |
attttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaat |
290 |
Q |
| |
|
|||||||| ||||| ||||||| |||| |||||| |||||||||||| |||||| | |||||||||| ||| ||||||||||| |
|
|
| T |
29454173 |
attttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagttatcaagatcttcaaat |
29454089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 19350947 - 19350907
Alignment:
| Q |
410 |
tctataattggagagataaaagggttgagcaaattaaatct |
450 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||||||| |
|
|
| T |
19350947 |
tctataattggagagataaaagagtagagcatattaaatct |
19350907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 278
Target Start/End: Original strand, 22028616 - 22028700
Alignment:
| Q |
194 |
tcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttca |
278 |
Q |
| |
|
|||||| ||||||||||||| |||||| |||| ||| | |||||| |||| ||||||| |||||| || || ||||||||||| |
|
|
| T |
22028616 |
tcaaggaaacccattttgttatatggaaaatgacggattatggagttgaagagtcttggactcaattacttaagattagttttca |
22028700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 29867260 - 29867328
Alignment:
| Q |
230 |
aattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatg |
298 |
Q |
| |
|
||||||| ||| |||||||||||| |||||| || | |||||||| || |||||||||||||||||| |
|
|
| T |
29867260 |
aattcggggttgaagattcttggactcaattccttagaattagttaccataatcttcaaattgattatg |
29867328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 29874547 - 29874603
Alignment:
| Q |
242 |
aagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatg |
298 |
Q |
| |
|
|||||||||||| || ||| || |||||||||| ||| |||||||||||||||||| |
|
|
| T |
29874547 |
aagattcttggactccattacttaaaattagttatcaaaatcttcaaattgattatg |
29874603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 12 - 394
Target Start/End: Complemental strand, 18909073 - 18908691
Alignment:
| Q |
12 |
tattcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttgctg |
111 |
Q |
| |
|
||||||| ||| || |||||||||||||||||||||| | ||||| ||||||||||| | || |||| | ||| ||||||||||| |||| |||||| |
|
|
| T |
18909073 |
tattcgagataagactgaatatgaatggaatgatattactatcaaacaatttgtgatagtctcgcttgatttggatacagagacatatcggcaattgctg |
18908974 |
T |
|
| Q |
112 |
ccacccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttg |
211 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||| || ||||||| ||| |||||| || |||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
18908973 |
ccacctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtctatgtttttctcaccgttttagagaaacccattttg |
18908874 |
T |
|
| Q |
212 |
ttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattactgattc |
311 |
Q |
| |
|
|| |||||| |||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||| ||||||| ||||||||||||||| |||| |
|
|
| T |
18908873 |
ttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgattatggcattggtgatag |
18908774 |
T |
|
| Q |
312 |
actggaatatggttctcaattgttcttgtttccgttgtacctttctgagagtgacaacacacttataatggcaagcaatcaac |
394 |
Q |
| |
|
|| | |||| | |||||||||||||||| || || | ||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
18908773 |
ccttgcatattatgctcaattgttcttgttaccattatgtgtttctgagagtagcaacacactggtaatggcaagcaatcaac |
18908691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 14 - 394
Target Start/End: Complemental strand, 18921027 - 18920646
Alignment:
| Q |
14 |
ttcgaaatatgaatgaatatgaatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttgctgcc |
113 |
Q |
| |
|
||||| ||| || |||||||||||||||||||||| | ||||| ||||||||||| | || |||| | ||| ||||||||||| |||| |||||||| |
|
|
| T |
18921027 |
ttcgagataagactgaatatgaatggaatgatattactatcaaacaatttgtgatagtctcgcttgatttggttacagagacatatcggcaattgctgcc |
18920928 |
T |
|
| Q |
114 |
acccaacggttttgttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttgtt |
213 |
Q |
| |
|
||| | ||||||||||||||||||||||||||| || ||||||| ||| |||||| || || ||||||||||||||||||| | | ||||||||||||| |
|
|
| T |
18920927 |
acctagcggttttgttgaagtaccacctgttgaaccgtctgttagtgtgttgatggattgtatatgtttttctcaccgttttagagaaacccattttgtt |
18920828 |
T |
|
| Q |
214 |
ttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattactgattcac |
313 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||| ||||||| |||||||||||||||| |||| | |
|
|
| T |
18920827 |
atatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgattatggcattagtgatagcc |
18920728 |
T |
|
| Q |
314 |
tggaatatggttctcaattgttcttgtttccgttgtacctttctgaga-gtgacaacacacttataatggcaagcaatcaac |
394 |
Q |
| |
|
| | |||| | |||||||||||||||| || || | ||||||||| || ||||||||| ||||||||||||||||||| |
|
|
| T |
18920727 |
ttgcatattatgctcaattgttcttgttaccattatgtgtttctgagacgtagcaacacactgataatggcaagcaatcaac |
18920646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 35 - 394
Target Start/End: Complemental strand, 18913798 - 18913439
Alignment:
| Q |
35 |
aatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttgctgccacccaacggttttgttgaagt |
134 |
Q |
| |
|
|||||||||||||| | || | ||||||||||| | || |||| | ||||||||||||||| | |||||| ||||||| | |||||||||||||| |
|
|
| T |
18913798 |
aatggaatgatattaccattgaacaatttgtgatagtctcgcttgatttggctacagagacataccaacagttgttgccacctagcggttttgttgaagc |
18913699 |
T |
|
| Q |
135 |
accacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattc |
234 |
Q |
| |
|
|||||| ||||| || ||||||| ||| |||||| || |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
18913698 |
accacccgttgaaccgtctgttagtgtgttgatggattgtctatgtttttctcaccgtttcaggggaacccattttgttatatggaagatgatggaattt |
18913599 |
T |
|
| Q |
235 |
ggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattactgattcactggaatatggttctcaattgt |
334 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||||||||||||||| ||||||| ||||||||||||||| |||| || | |||| | ||||||||| |
|
|
| T |
18913598 |
ggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgattatggcattggtgatagccttgcatattatgctcaattgt |
18913499 |
T |
|
| Q |
335 |
tcttgtttccgttgtacctttctgagagtgacaacacacttataatggcaagcaatcaac |
394 |
Q |
| |
|
||||||| || || | ||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
18913498 |
tcttgttaccattatgtgtttctgagagtagcaacacactggtaatggcaagcaatcaac |
18913439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 22051790 - 22051705
Alignment:
| Q |
235 |
ggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgattatggcattactgattcactggaata |
320 |
Q |
| |
|
||||||||||| | ||||| ||||||| |||||||||||| |||| |||||||||||||||||| |||| ||||||||| ||||| |
|
|
| T |
22051790 |
ggagttcaagaatattggactcaatttttcaaaattagttatcagaatcttcaaattgattatgttattagtgattcactagaata |
22051705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 25377072 - 25377142
Alignment:
| Q |
204 |
ccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagtt |
274 |
Q |
| |
|
|||||||||| |||||||||||| ||| || ||||||||||| |||||||||||||| | |||||||||| |
|
|
| T |
25377072 |
ccattttgttatatggatgatgaaggattttggagttcaagagtcttggattcaattatttaaaattagtt |
25377142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 289
Target Start/End: Original strand, 554438 - 554559
Alignment:
| Q |
168 |
gaatcgtctatgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaa |
267 |
Q |
| |
|
|||| |||| |||||||||||| ||| ||||||||||| || || ||||| ||||| |||| |||||| |||| ||||||| |||||| || ||| |
|
|
| T |
554438 |
gaattgtctttgtttttctcacgattttgagggaacccatcttattatatggcaaatgatagaatatggagttaaagagtcttggactcaattacttaaa |
554537 |
T |
|
| Q |
268 |
attagttttcaggatcttcaaa |
289 |
Q |
| |
|
||||||| | ||| |||||||| |
|
|
| T |
554538 |
attagttatgaggttcttcaaa |
554559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 14514886 - 14514991
Alignment:
| Q |
192 |
tttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaatt |
291 |
Q |
| |
|
||||||| ||||||| ||||| |||||| ||| ||||| |||||| |||||||||||| |||||| || |||||||||| | | |||||||||| |
|
|
| T |
14514886 |
tttcaagaaaacccatcttgttatatggaaaatggatgaatttggagttgaagattcttggactcaattccttaaaattagttatatgaatcttcaaata |
14514985 |
T |
|
| Q |
292 |
gattat |
297 |
Q |
| |
|
|||||| |
|
|
| T |
14514986 |
gattat |
14514991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 20975547 - 20975612
Alignment:
| Q |
195 |
caagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatt |
260 |
Q |
| |
|
|||||||| ||||||||| ||||| |||| |||||| |||||| ||||||||||||||||||| |
|
|
| T |
20975547 |
caagggaaatcattttgttatatggcaaatgagggaatttggagttgaagattcttggattcaatt |
20975612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 18913409 - 18913365
Alignment:
| Q |
400 |
catgcaattatctataattggagagataaaagggttgagcaaatt |
444 |
Q |
| |
|
||||||||| ||||||||||||||||||| | |||||||||||| |
|
|
| T |
18913409 |
catgcaattctctataattggagagataataaagttgagcaaatt |
18913365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 28 - 294
Target Start/End: Original strand, 14749219 - 14749485
Alignment:
| Q |
28 |
gaatatgaatggaatgatatttcaatcaaccaatttgtgatcttatcacttgttctggctacagagacattcaggcagttgctgccacccaacggttttg |
127 |
Q |
| |
|
|||||||| | |||||||||||||||| |||||||| | || | ||||||| ||| |||| ||||||| | | | || ||||||| | || |||| |
|
|
| T |
14749219 |
gaatatgattagaatgatatttcaatcgaccaatttctcattgtttcacttgatctaactacggagacataccgtcgtttcttgccacctcagggatttg |
14749318 |
T |
|
| Q |
128 |
ttgaagtaccacctgttgagccatctgttactgtattgatgaatcgtctatgtttttctcaccgtttcaagggaacccattttgttttatggatgatgat |
227 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | |||||| || ||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |
|
|
| T |
14749319 |
ttgaagtaccatctgttgagccatctgttaccattttgatggattgtctatgtttttctcaccgtttcaaagagacccattttgttttatggaggatgat |
14749418 |
T |
|
| Q |
228 |
ggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgat |
294 |
Q |
| |
|
|||||| ||||||||||| ||||||| |||||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
14749419 |
ggaatttggagttcaagagtcttggactcaattcctcaaaattagccttcaggaccttcaaattgat |
14749485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 331 - 497
Target Start/End: Original strand, 14749498 - 14749682
Alignment:
| Q |
331 |
ttgttcttgtttccgttgtacctttctgagagtgacaacacacttataatggcaagcaatcaacca------------------agccatgcaattatct |
412 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||||||||| |
|
|
| T |
14749498 |
ttgttcttatttccattgtacctttctgagagtgacaacacacttataatggcaatcaatcgacaaggctatgatgatcataacagccatgcaattatct |
14749597 |
T |
|
| Q |
413 |
ataattggagagataaaagggttgagcaaattaaatctcttcacaatgtaatattgtggtttcaaaccagggattattttgaaag |
497 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| |||| | |||||| ||||||||||||| | |||| ||||| | ||||||| |
|
|
| T |
14749598 |
ataattggatagataaaagggttgaacaaattacatctggtgacaatgaaatattgtggttttataccaaggattttgttgaaag |
14749682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 29597650 - 29597550
Alignment:
| Q |
178 |
tgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttc |
277 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||||||| ||||| ||||| ||||| |||||| || | ||||||| |||||| || ||||||||||||| |
|
|
| T |
29597650 |
tgtttttctcaccatttcaaggaaactcattttgttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaaattagttttc |
29597551 |
T |
|
| Q |
278 |
a |
278 |
Q |
| |
|
| |
|
|
| T |
29597550 |
a |
29597550 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 293
Target Start/End: Complemental strand, 28763981 - 28763888
Alignment:
| Q |
200 |
gaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattga |
293 |
Q |
| |
|
|||||||||||||| |||||| ||||| | |||| |||||| || | ||||||| || ||| |||||||| || | |||||||||||||||||| |
|
|
| T |
28763981 |
gaacccattttgttatatggaagatgacgcaatttggagttgaaaagtcttggagtcgattcctcaaaatcagctatcaggatcttcaaattga |
28763888 |
T |
|
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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 10553630 - 10553548
Alignment:
| Q |
192 |
tttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagtt |
274 |
Q |
| |
|
||||||||||| |||| |||||||||||| |||| || || ||||||||||| ||||||||||| || || || ||||||| |
|
|
| T |
10553630 |
tttcaagggaagccatcttgttttatggaaaatgacagattttggagttcaagagtcttggattcagttgcttaacattagtt |
10553548 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 288
Target Start/End: Original strand, 53790525 - 53790635
Alignment:
| Q |
178 |
tgtttttctcaccgtttcaagggaacccattttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttc |
277 |
Q |
| |
|
|||||||||||| | | ||| |||| |||||| || |||||| ||||| |||| ||| || || | ||||||| ||||||||| ||||||||||||| |
|
|
| T |
53790525 |
tgtttttctcactatgttaagagaactcattttattatatggaagatgacaaaatttggatttgaacaatcttggactcaatttcttaaaattagttttc |
53790624 |
T |
|
| Q |
278 |
aggatcttcaa |
288 |
Q |
| |
|
|| |||||||| |
|
|
| T |
53790625 |
agaatcttcaa |
53790635 |
T |
|
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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 296
Target Start/End: Complemental strand, 4366565 - 4366475
Alignment:
| Q |
206 |
attttgttttatggatgatgatggaattcggagttcaagattcttggattcaatttctcaaaattagttttcaggatcttcaaattgatta |
296 |
Q |
| |
|
|||||||||||||| ||||| | ||||||| ||| |||| ||||||| || |||||| ||| |||||| ||| |||||||||| ||||| |
|
|
| T |
4366565 |
attttgttttatggcagatgaagaaattcggggttgaagagtcttggactccatttcttaaagttagttaccagaatcttcaaatagatta |
4366475 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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